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Report for CCDS8448.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8448.2 Public Homo sapiens 11 TBRG1 24 110 108 CCDS HistoryNCBI Gene:84897Re-query CCDS DB by CCDS ID:8448.2Re-query CCDS DB by GeneID:84897See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 8448.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in the extension of the N-terminus to one that is better supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8448.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441174.8 ENSP00000409016.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441174.8Link to Ensembl Protein Viewer:ENSP00000409016.3Re-query CCDS DB by Nucleotide ID:ENST00000441174Re-query CCDS DB by Protein ID:ENSP00000409016
Original member Current member NCBI NM_032811.3 NP_116200.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032811.3Link to Protein Sequence:NP_116200.2Re-query CCDS DB by Nucleotide ID:NM_032811Re-query CCDS DB by Protein ID:NP_116200Link to BLAST:NP_116200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116200.2 411 Q3YBR2-1 411 100% 0 0

Chromosomal Locations for CCDS 8448.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124623084 124623233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124624931 124625001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124625671 124625903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124626473 124626609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124626904 124627050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124630388 124630485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124630745 124630855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124631275 124631417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124632093 124632238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGAGCCTGCTGGACGGCCTCGCTTCCTCGCCGCGGGCTCCGCTGCAGTCCAGCAAGGCCAGGATGAAAA
AG
CTCCCGAAGAAGAGCCAGAATGAGAAGTACCGGCTGAAGTACCTGCGGCTGCGCAAAGCGGCCAAGGC
C
ACGGTGTTTGAAAATGCTGCTATTTGTGATGAAATTGCTCGTCTTGAGGAAAAATTTCTTAAAGCAAAA
GAA
GAAAGAAGGTACTTGCTAAAGAAGCTCCTCCAGCTTCAGGCTCTAACTGAAGGGGAAGTACAGGCTG
CA
GCTCCTTCCCACAGTTCCAGTTTGCCCCTGACTTATGGTGTGGCCAGCTCTGTGGGAACTATACAGGG
A
GCTGGGCCTATTTCAGGGCCCAGCACTGGGGCTGAGGAACCATTTGGGAAGAAAACTAAGAAGGAGAAA
AAA
GAAAAAGGCAAAGAGAACAACAAACTGGAAGTTCTGAAGAAAACATGCAAGAAAAAGAAAATGGCGG
GA
GGTGCTCGCAAGCTGGTTCAGCCCATTGCCCTGGATCCCTCAGGACGGCCTGTGTTCCCCATCGGACT
A
GGGGGTCTAACAGTATATAGCCTGGGGGAGATCATCACCGACCGACCTGGCTTTCATGATGAGAGTGCC
ATC
TACCCCGTGGGCTATTGCAGTACTCGAATATATGCCAGCATGAAGTGCCCAGACCAGAAGTGTCTAT
AT
ACCTGTCAGATCAAGGATGGTGGTGTGCAGCCTCAGTTTGAAATTGTTCCTGAAGATGACCCCCAGAA
T
GCCATTGTCAGCTCTTCTGCAGATGCTTGTCATGCAGAACTGCTCAGGACTATAAGCACTACTATGGGG
AAA
CTAATGCCTAACCTGCTTCCAGCTGGAGCTGACTTTTTTGGATTTTCTCATCCAGCCATCCACAACC
TG
ATCCAGAGCTGTCCAGGAGCTCGAAAATGCATCAATTACCAGTGGGTGAAATTTGATGTGTGCAAACC
T
GGAGATGGGCAGCTACCTGAGGGGCTGCCGGAGAATGATGCAGCTATGAGCTTTGAAGCCTTTCAGAGA
CAG
ATCTTTGATGAAGATCAGAATGATCCCCTTCTGCCAGGATCCTTGGACCTCCCAGAGCTTCAGCCTG
CA
GCCTTTGTGTCTTCTTACCAGCCCATGTACCTGACACATGAACCCTTGGTAGATACTCACCTGCAGCA
C
TTGAAGTCTCCATCACAGGGTAGCCCAATTCAGTCTTCAGATTGA


Translation (411 aa):
MSLLDGLASSPRAPLQSSKARMKKLPKKSQNEKYRLKYLRLRKAAKATVFENAAICDEIARLEEKFLKAK
E
ER
RYLLKKLLQLQALTEGEVQAAAPSHSSSLPLTYGVASSVGTIQGAGPISGPSTGAEEPFGKKTKKEK
K
EKGKENNKLE
VLKKTCKKKKMAGGARKLVQPIALDPSGRPVFPIGLGGLTVYSLGEIITDRPGFHDESA
I
YPVGYCSTRIYASMKCPDQKCLYTCQIKDGGVQPQ
FEIVPEDDPQNAIVSSSADACHAELLRTISTTMG
K
LMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCI
NYQWVKFDVCKPGDGQLPEGLPENDAAMSFEAFQR
Q
IFDEDQNDPLLP
GSLDLPELQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD



Links Key
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