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Report for CCDS8424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8424.1 Public Homo sapiens 11 THY1 24 110 108 CCDS HistoryNCBI Gene:7070Re-query CCDS DB by CCDS ID:8424.1Re-query CCDS DB by GeneID:7070See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284240.10 ENSP00000284240.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284240.10Link to Ensembl Protein Viewer:ENSP00000284240.6Re-query CCDS DB by Nucleotide ID:ENST00000284240Re-query CCDS DB by Protein ID:ENSP00000284240
Original member Current member EBI ENST00000528522.5 ENSP00000431301.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528522.5Link to Ensembl Protein Viewer:ENSP00000431301.1Re-query CCDS DB by Nucleotide ID:ENST00000528522Re-query CCDS DB by Protein ID:ENSP00000431301
Original member Current member NCBI NM_001311160.2 NP_001298089.1 Accepted alive Link to Nucleotide Sequence:NM_001311160.2Link to Protein Sequence:NP_001298089.1Re-query CCDS DB by Nucleotide ID:NM_001311160Re-query CCDS DB by Protein ID:NP_001298089Link to BLAST:NP_001298089.1
Original member Current member NCBI NM_001311162.2 NP_001298091.1 Accepted alive Link to Nucleotide Sequence:NM_001311162.2Link to Protein Sequence:NP_001298091.1Re-query CCDS DB by Nucleotide ID:NM_001311162Re-query CCDS DB by Protein ID:NP_001298091Link to BLAST:NP_001298091.1
Original member Current member NCBI NM_006288.5 NP_006279.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006288.5Link to Protein Sequence:NP_006279.2Re-query CCDS DB by Nucleotide ID:NM_006288Re-query CCDS DB by Protein ID:NP_006279Link to BLAST:NP_006279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298089.1 161 P04216 161 100% 0 0
NP_001298091.1 161 P04216 161 100% 0 0
NP_006279.2 161 P04216 161 100% 0 0

Chromosomal Locations for CCDS 8424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119419408 119419520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119420051 119420386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119420869 119420905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGAACCTGGCCATCAGCATCGCTCTCCTGCTAACAGTCTTGCAGGTCTCCCGAGGGCAGAAGGTGACCA
GCCTAACGGCCTGCCTAGTGGACCAGAGCCTTCGTCTGGACTGCCGCCATGAGAATACCAGCAGTTCACC
CATCCAGTACGAGTTCAGCCTGACCCGTGAGACAAAGAAGCACGTGCTCTTTGGCACTGTGGGGGTGCCT
GAGCACACATACCGCTCCCGAACCAACTTCACCAGCAAATACAACATGAAGGTCCTCTACTTATCCGCCT
TCACTAGCAAGGACGAGGGCACCTACACGTGTGCACTCCACCACTCTGGCCATTCCCCACCCATCTCCTC
CCAGAACGTCACAGTGCTCAGAGACAAACTGGTCAAGTGTGAGGGCATCAGCCTGCTGGCTCAGAACACC
TCGTGGCTGCTGCTGCTCCTGCTCTCCCTCTCCCTCCTCCAGGCCACGGATTTCATGTCCCTGTGA

Translation (161 aa):
MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGVP
EHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLRDKLVKCEGISLLAQNT
SWLLLLLLSLSLLQATDFMSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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