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Report for CCDS8352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8352.1 Public Homo sapiens 11 HSPB2 24 110 108 CCDS HistoryNCBI Gene:3316Re-query CCDS DB by CCDS ID:8352.1Re-query CCDS DB by GeneID:3316See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304298.4 ENSP00000302476.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304298.4Link to Ensembl Protein Viewer:ENSP00000302476.3Re-query CCDS DB by Nucleotide ID:ENST00000304298Re-query CCDS DB by Protein ID:ENSP00000302476
Original member Current member EBI ENST00000527616.1 ENSP00000457706.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527616.1Link to Ensembl Protein Viewer:ENSP00000457706.1Re-query CCDS DB by Nucleotide ID:ENST00000527616Re-query CCDS DB by Protein ID:ENSP00000457706
Original member Current member NCBI NM_001541.4 NP_001532.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001541.4Link to Protein Sequence:NP_001532.1Re-query CCDS DB by Nucleotide ID:NM_001541Re-query CCDS DB by Protein ID:NP_001532Link to BLAST:NP_001532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001532.1 182 Q16082 182 100% 0 0

Chromosomal Locations for CCDS 8352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111912830 111912923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111913441 111913895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGTCGGGCCGCTCAGTGCCACATGCCCACCCGGCCACCGCCGAGTACGAATTTGCCAACCCGAGCCGCC
TGGGTGAGCAGCGCTTCGGAGAAGGCCTCCTGCCAGAAGAGATCCTGACCCCCACACTCTACCATGGCTA
CTATGTCCGGCCTCGGGCCGCCCCAGCTGGGGAGGGCAGCAGGGCAGGGGCCTCCGAGCTTAGGCTCAGT
GAGGGCAAGTTCCAGGCATTTCTGGATGTGAGCCACTTTACCCCAGACGAGGTGACTGTGAGGACTGTGG
ATAACCTGCTGGAGGTGTCTGCCCGGCACCCCCAGCGCCTGGACCGCCACGGCTTCGTGTCCCGAGAGTT
CTGCCGCACCTATGTCCTGCCTGCTGATGTCGACCCCTGGCGAGTCCGAGCTGCTCTCTCCCATGATGGC
ATCTTAAACCTGGAAGCACCTCGGGGTGGCCGACATTTGGACACAGAGGTCAATGAGGTCTACATCTCCC
TGCTCCCTGCGCCTCCTGATCCAGAGGAAGAGGAGGAGGCAGCCATAGTTGAGCCCTGA

Translation (182 aa):
MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASELRLS
EGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDG
ILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIVEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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