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Report for CCDS83266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83266.1 Public Homo sapiens 8 CDCA2 24 110 108 CCDS HistoryNCBI Gene:157313Re-query CCDS DB by CCDS ID:83266.1Re-query CCDS DB by GeneID:157313See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83266.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380665.3 ENSP00000370040.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380665.3Link to Ensembl Protein Viewer:ENSP00000370040.3Re-query CCDS DB by Nucleotide ID:ENST00000380665Re-query CCDS DB by Protein ID:ENSP00000370040
Original member Current member NCBI NM_001317906.1 NP_001304835.1 Accepted alive Link to Nucleotide Sequence:NM_001317906.1Link to Protein Sequence:NP_001304835.1Re-query CCDS DB by Nucleotide ID:NM_001317906Re-query CCDS DB by Protein ID:NP_001304835Link to BLAST:NP_001304835.1

Chromosomal Locations for CCDS 83266.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25460368 25460554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25462054 25462208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25466175 25466325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25468217 25468413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25469896 25469980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25479913 25480124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25483399 25483486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25483966 25484210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25485759 25485837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25487246 25487334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25488552 25488689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25503373 25503544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25506510 25507738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3027 nt):
ATGTCGTCCGTTTCAGGAAATGCCTCTTTCATTTTGGGAACTGGGAAGATTGTGACTCCTCAGAAGCATG
CCGAATTACCTCCTAATCCTTGCACACCAGATACTTTTAAATCACCTTTGAACTTTTCCACAGTAACCGT
AGAGCAATTGGGAATTACACCTGAAAGCTTTGTTAGGAACTCTGCAGGAAAGTCATCATCCTACCTTAAA
AAATGTAGACGACGTTCTGCAGTCGGTGCTCGGGGCTCTCCTGAAACAAACCATCTGATTCGTTTCATTG
CTCGGCAGCAAAATATAAAGAATGCTAGGAAATCTCCTTTGGCACAAGATTCTCCTTCCCAGGGCAGCCC
TGCACTGTATCGAAATGTTAACACTTTAAGAGAACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATA
AAGGAAAACGAGAAAATGACCGGCTGTCTGGAATTCTCAGAGGCAGGAAAAGAGTCCGAGATGACAGACT
TGACCAGAAAGGAAGGTCTCAGCGCTTGCCAGCAGTCTGGGTTCCCTGCAGTGTTGTCCTCCAAACGTCG
GAGAATATCCTATCAGAGAGACTCTGATGAAAATCTGACGGATGCTGAAGGAAAAGTAATTGGTCTCCAG
ATATTCAATATTGATACAGACAGAGCATGTGCAGTTGAAACTTCTGTAGATCTTTCTGAGATATCATCTA
AACTTGGTTCAACACAGTCTGGATTTTTAGTTGAAGAGTCTCTTCCCCTTTCAGAGCTCACAGAGACTTC
AAATGCACTAAAGGTTGCTGACTGTGTAGTGGGCAAAGGATCAAGTGATGCCGTTTCGCCTGACACGTTC
ACAGCAGAAGTGAGCTCAGACGCAGTCCCTGATGTCAGGTCACCAGCTACTCCAGCCTGCAGGAGGGACC
TTCCCACCCCCAAGACCTTTGTACTTCGTTCTGTACTGAAGAAACCCTCTGTTAAGATGTGTCTAGAGAG
CTTACAGGAACACTGTAACAACCTCTATGATGATGATGGGACTCATCCGAGCTTAATCTCAAATCTCCCA
AACTGTTGCAAAGAGAAAGAAGCAGAAGATGAAGAAAATTTTGAAGCACCTGCCTTTCTAAATATGAGGA
AGAGGAAGAGAGTTACTTTTGGAGAGGACTTAAGCCCGGAAGTGTTTGATGAATCTTTGCCAGCAAATAC
TCCATTGCGTAAAGGAGGAACACCTGTTTGTAAAAAAGACTTCAGTGGTCTCAGTTCCCTGCTGCTTGAG
CAGTCACCTGTTCCTGAGCCATTACCTCAACCAGATTTTGATGACAAGGGGGAGAATCTTGAAAACATAG
AACCACTTCAAGTATCATTTGCCGTTCTCAGTTCTCCTAATAAATCATCAATCTCTGAGACCCTTTCAGG
CACTGATACCTTTAGTTCTTCAAATAACCATGAGAAAATATCCTCTCCTAAAGTTGGTAGAATAACAAGG
ACTTCTAACAGAAGAAATCAATTGGTCAGTGTTGTAGAAGAGAGTGTTTGCAACTTATTGAATACAGAAG
TTCAGCCTTGTAAAGAAAAGAAAATTAATAGGAGGAAGTCTCAAGAAACAAAGTGTACAAAGAGAGCACT
TCCTAAGAAGAGTCAGGTTTTAAAAAGTTGCAGAAAGAAGAAAGGAAAGGGAAAGAAAAGTGTTCAGAAA
TCTTTATATGGGGAAAGAGACATTGCTTCTAAGAAGCCCCTCCTCAGTCCTATTCCCGAGCTGCCTGAAG
TCCCTGAGATGACACCTTCCATTCCGAGCATCCGAAGACTGGGTTCAGGTTATTTCAGTTCAAATGGCAA
ACTGGAAGAAGTGAAGACTCCTAAAAATCCAGTGAAAAGAAAGGATCTTTTGCGTCATGACCCAGATTTG
CATATGCATCAAGGCTATGATAAATATGATGTCTCTGAATTCTGCTCTTATATAAAAAGTTCCTCATCGC
TTGGCAATGCTACTTCTGATGAAGATCCAAATACAAATATAATGAACATTAATGAAAATAAAAATATTCC
AAAAGCAAAAAATAAGTCAGAAAGTGAAAATGAACCAAAAGCTGGAACTGACAGTCCTGTTTCTTGTGCT
TCTGTAACTGAAGAACGTGTGGCATCAGATAGTCCCAAACCTGCTCTGACCCTGCAGCAGGGTCAAGAAT
TTTCTGCTGGTGGTCAAAATGCAGAAAACCTTTGTCAGTTCTTTAAAATTTCACCAGATTTAAACATAAA
GTGTGAAAGAAAGGATGACTTCTTAGGAGCTGCAGAAGGAAAACTGCAATGCAATCGTTTAATGCCTAAT
TCACAAAAAGACTGTCATTGTTTAGGAGATGTCTTAATTGAAAATACGAAAGAATCTAAAAGCCAGAGTG
AGGATTTGGGAAGAAAACCCATGGAAAGTAGCAGTGTTGTGAGTTGCAGAGACAGGAAAGATAGAAGACG
TTCCATGTGTTATTCTGATGGTCGAAGTTTACATTTGGAAAAAAATGGAAATCACACACCATCCTCCAGT
GTGGGCAGCTCTGTAGAAATTAGTTTAGAAAATTCTGAACTGTTTAAAGATTTGTCTGATGCCATTGAGC
AAACCTTTCAGAGGAGAAATAGTGAAACCAAAGTGCGACGTAGCACGAGGCTACAGAAGGATTTAGAAAA
CGAAGGTCTTGTATGGATTTCACTTCCACTTCCTTCCACTTCCCAAAAAGCCAAAAGAAGAACAATATGT
ACATTTGACAGCAGTGGATTTGAAAGTATGTCTCCCATAAAAGAAACTGTGTCCTCCAGACAAAAACCGC
AGATGGCACCTCCCGTCTCAGATCCAGAAAACAGCCAGGGCCCTGCTGCTGGTTCTTCCGATGAACCTGG
TAAGAGGAGGAAGAGCTTTTGTATATCTACACTTGCAAATACTAAAGCCACTTCCCAGTTCAAAGGCTAC
CGGAGAAGATCCTCTCTTAATGGGAAGGGAGAGAGCTCTCTGACTGCCTTGGAAAGGATTGAACATAATG
GAGAAAGAAAGCAGTAA

Translation (1008 aa):
MSSVSGNASFILGTGKIVTPQKHAELPPNPCTPDTFKSPLNFSTVTVEQLGITPESFVRNSAGKSSSYLK
KCRRRSAVGARGSPETNHLIRFIARQQNIKNARKSPLAQDSPSQGSPALYRNVNTLRERISAFQSAFHSI
KENEKMTGCLEFSEAGKESEMTDLTRKEGLSACQQSGFPAVLSSKRRRISYQRDSDENLTDAEGKVIGLQ
IFNIDTDRACAVETSVDLSEISSKLGSTQSGFLVEESLPLSELTETSNALKVADCVVGKGSSDAVSPDTF
TAEVSSDAVPDVRSPATPACRRDLPTPKTFVLRSVLKKPSVKMCLESLQEHCNNLYDDDGTHPSLISNLP
NCCKEKEAEDEENFEAPAFLNMRKRKRVTFGEDLSPEVFDESLPANTPLRKGGTPVCKKDFSGLSSLLLE
QSPVPEPLPQPDFDDKGENLENIEPLQVSFAVLSSPNKSSISETLSGTDTFSSSNNHEKISSPKVGRITR
TSNRRNQLVSVVEESVCNLLNTEVQPCKEKKINRRKSQETKCTKRALPKKSQVLKSCRKKKGKGKKSVQK
SLYGERDIASKKPLLSPIPELPEVPEMTPSIPSIRRLGSGYFSSNGKLEEVKTPKNPVKRKDLLRHDPDL
HMHQGYDKYDVSEFCSYIKSSSSLGNATSDEDPNTNIMNINENKNIPKAKNKSESENEPKAGTDSPVSCA
SVTEERVASDSPKPALTLQQGQEFSAGGQNAENLCQFFKISPDLNIKCERKDDFLGAAEGKLQCNRLMPN
SQKDCHCLGDVLIENTKESKSQSEDLGRKPMESSSVVSCRDRKDRRRSMCYSDGRSLHLEKNGNHTPSSS
VGSSVEISLENSELFKDLSDAIEQTFQRRNSETKVRRSTRLQKDLENEGLVWISLPLPSTSQKAKRRTIC
TFDSSGFESMSPIKETVSSRQKPQMAPPVSDPENSQGPAAGSSDEPGKRRKSFCISTLANTKATSQFKGY
RRRSSLNGKGESSLTALERIEHNGERKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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