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Report for CCDS82744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82744.1 Public Homo sapiens 3 EFHB 24 110 108 CCDS HistoryNCBI Gene:151651Re-query CCDS DB by CCDS ID:82744.1Re-query CCDS DB by GeneID:151651See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344838.8 ENSP00000342263.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344838.8Link to Ensembl Protein Viewer:ENSP00000342263.4Re-query CCDS DB by Nucleotide ID:ENST00000344838Re-query CCDS DB by Protein ID:ENSP00000342263
Original member Current member NCBI NM_001330688.2 NP_001317617.1 Accepted alive Link to Nucleotide Sequence:NM_001330688.2Link to Protein Sequence:NP_001317617.1Re-query CCDS DB by Nucleotide ID:NM_001330688Re-query CCDS DB by Protein ID:NP_001317617Link to BLAST:NP_001317617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317617.1 703 Q8N7U6-3 703 100% 0 0

Chromosomal Locations for CCDS 82744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19879631 19879804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19882550 19882731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19884403 19884615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19888444 19888651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19896687 19896841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19898778 19898845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19899432 19899515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19905620 19905749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19915303 19915413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19918232 19918412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19919833 19919976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19920505 19920567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19933230 19933465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19936141 19936303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGATGGCTCACTGCCGCATAGACCTCCTGGGCTCAAGTGATCCTCCCACTTCAGCCTCTCAGATAGCTG
AGACTACAGATGTGAGCCACCACGCTGGGCTAATTGAATTCTTGGCGTTAAGCAATTCTTCTGCCTTGGC
TTCCCGAAGTGTTGAGATTACAGAGATTAAGCTTCCTGTGGAGGTGGACATTGGACTAACCCAAGCCGAG
GGGCCAGATGAGACTAAGAATACAGAGCCCCAAATGGGCTTGGTGATAGAACCTCCCCAATGCCAGTTTG
CCCAACAACATGAACAGAGAAAGGAGGCTGGAAACATTGAATCAGGAGTGGAACCTCCAGATCGCATCAG
ACCCATATACTCTGGGAAGTTTTTTGATCGGACCCCTTGCTGGCCAAGTGCAGGAAAAGTTATTCCAGTT
GGTTACAGAGTTGCAACCTGCTTGACTGAAAAACTTCCCAGGCTAATTACTCCACCTGAAGCAAAAAAGT
ATTTCAACTTCAGATATCCACCTGCTGGAGTAGAAAGAGTATTTTACGGAAGAGCAAATGATCCCCAGAT
TGCACCTTATTTGACACATGGAATTAGATCTAAAATTTCAGTACTGGCAAACACATTGATAAACCCACAG
CCTATTACCACATTTCAACAGAAAATTAAAGATAAAAAAGAATCTATATATCTTAGCAATCGACGAGCAC
CATTAGGAAAATCTCACGATCAAGCACCAGGATTACCAAAAGGCATGGACACAACCAATACGACATTTGG
GACAGCAGTCATCAAAGAATACTCTGCTAAAGATGTGGTGAATCCACCAAAATCCTATGAAGAAGTATTT
AAAGAAGGAAATGAAGGACATGATTTGTATGTTGTTTCTCACAATGATTATTATGCAGGAGAGGCAAAGA
ACCGAAAGTATAACCCATCAAGTTTCCATAGGTGTAGTGTGTATGGAGTACCAACACCACATTTTAATGA
TGGACGAGCCATGGCAAAATCTCTATATTGGCTCCATGAACTACAAATGAAAAGAGGAGCTAAGTTTGTA
TCCAAAAGAGCAGATGATTTCAAAGAAAAGTTTCAACATAAACTTGGAAGAGTTTTAGATCCCATTGCAG
AAACAATGAATGTTCCCCCAGACTGCACATTTGGAGCTTGTCTCCGTCCTGAGGAATATGGAGTTGGTGA
TCTCATCCATAATAGACTTCCGGATGAATATCTTCGAGGCAAGGATAGACAGCGAGCCCTGATTGCAGCA
GTTCGGCATCACCTGAAGAAAGTTAATTACCAAAAGTTTGACACTTTGCTGGCAGCCTTCAGGCACTATG
ACAAGAAGGGAGATGGGATGATAGATAAAGACGAGCTGCAGGAAGCTTGTGACCAGGCCAACTTGAGTTT
AGATGACAAGCTCCTGGACCAGCTATTTGACTACTGTGATGTGGATAATGATGGCTTCATTAACTATCTG
GAATTCGCAAATTTTCTTAACTGGAAAGACAAAATGCTTCTTAAAGAGTATGAAGAGAGGGTCATTATTA
AAGGTAGAAAACCAGATTGTGTAAACCCTACTGAGGCTAATGTTGAAGAACCTGAACAAACTCTCCTCAT
AAAGCCAGAAGATATTGTCTTAAAAGAAGCAGGAAGCACAGAAAAGACTCTCCGGACACTTCTGAGACCA
AGTGATAAAGTTTCCAACTACTATAAGACAACTTCTTCTGAGATCAATGCAATTGTAGGAGCCATTCCTT
CTACTTGTTACCCCATTTGTGGTGTTCCAACCATTCGATCTGACATTCCTGCTCCCCGAATTCGTCGCAT
CAGTGACAGAACTAATTATGGTGAAGAAGGTAGTGCATATTCACTACTATATCCTACCATTTTTGCCCGG
AAAGGAGTGTTTGAAAGAGACTTCTTCAAGACCAGATCAAAAGAAGAGATTGCAGAGATATTGTGTAACA
TTGGTGTCAAACTGTCTGATGAAGAATTTGAAAATGTATGGAATCTTGCATCAAAAAAGCATCACAGAGG
AGAAGTTTGTGTTGAGAACATCAGAAATGTTCTAGATGAGCTACGGCATGCAGACCGGATCAAGTGTAAA
ACACTCATGTGA

Translation (703 aa):
MMAHCRIDLLGSSDPPTSASQIAETTDVSHHAGLIEFLALSNSSALASRSVEITEIKLPVEVDIGLTQAE
GPDETKNTEPQMGLVIEPPQCQFAQQHEQRKEAGNIESGVEPPDRIRPIYSGKFFDRTPCWPSAGKVIPV
GYRVATCLTEKLPRLITPPEAKKYFNFRYPPAGVERVFYGRANDPQIAPYLTHGIRSKISVLANTLINPQ
PITTFQQKIKDKKESIYLSNRRAPLGKSHDQAPGLPKGMDTTNTTFGTAVIKEYSAKDVVNPPKSYEEVF
KEGNEGHDLYVVSHNDYYAGEAKNRKYNPSSFHRCSVYGVPTPHFNDGRAMAKSLYWLHELQMKRGAKFV
SKRADDFKEKFQHKLGRVLDPIAETMNVPPDCTFGACLRPEEYGVGDLIHNRLPDEYLRGKDRQRALIAA
VRHHLKKVNYQKFDTLLAAFRHYDKKGDGMIDKDELQEACDQANLSLDDKLLDQLFDYCDVDNDGFINYL
EFANFLNWKDKMLLKEYEERVIIKGRKPDCVNPTEANVEEPEQTLLIKPEDIVLKEAGSTEKTLRTLLRP
SDKVSNYYKTTSSEINAIVGAIPSTCYPICGVPTIRSDIPAPRIRRISDRTNYGEEGSAYSLLYPTIFAR
KGVFERDFFKTRSKEEIAEILCNIGVKLSDEEFENVWNLASKKHHRGEVCVENIRNVLDELRHADRIKCK
TLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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