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Report for CCDS82403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82403.1 Public Homo sapiens 19 ZSCAN5A 24 110 108 CCDS HistoryNCBI Gene:79149Re-query CCDS DB by CCDS ID:82403.1Re-query CCDS DB by GeneID:79149See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 82403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000592355.5 ENSP00000467238.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592355.5Link to Ensembl Protein Viewer:ENSP00000467238.1Re-query CCDS DB by Nucleotide ID:ENST00000592355Re-query CCDS DB by Protein ID:ENSP00000467238
Original member Current member NCBI NM_001322061.4 NP_001308990.2 Accepted alive Link to Nucleotide Sequence:NM_001322061.4Link to Protein Sequence:NP_001308990.2Re-query CCDS DB by Nucleotide ID:NM_001322061Re-query CCDS DB by Protein ID:NP_001308990Link to BLAST:NP_001308990.2
Original member Current member NCBI NM_001322062.2 NP_001308991.2 Accepted alive Link to Nucleotide Sequence:NM_001322062.2Link to Protein Sequence:NP_001308991.2Re-query CCDS DB by Nucleotide ID:NM_001322062Re-query CCDS DB by Protein ID:NP_001308991Link to BLAST:NP_001308991.2
Original member Current member NCBI NM_001322073.2 NP_001309002.1 Accepted alive Link to Nucleotide Sequence:NM_001322073.2Link to Protein Sequence:NP_001309002.1Re-query CCDS DB by Nucleotide ID:NM_001322073Re-query CCDS DB by Protein ID:NP_001309002Link to BLAST:NP_001309002.1
Original member Current member NCBI NM_001322074.2 NP_001309003.1 Accepted alive Link to Nucleotide Sequence:NM_001322074.2Link to Protein Sequence:NP_001309003.1Re-query CCDS DB by Nucleotide ID:NM_001322074Re-query CCDS DB by Protein ID:NP_001309003Link to BLAST:NP_001309003.1
Original member Current member NCBI NM_001322075.2 NP_001309004.1 Accepted alive Link to Nucleotide Sequence:NM_001322075.2Link to Protein Sequence:NP_001309004.1Re-query CCDS DB by Nucleotide ID:NM_001322075Re-query CCDS DB by Protein ID:NP_001309004Link to BLAST:NP_001309004.1
Original member Current member NCBI NM_001322076.2 NP_001309005.1 Accepted alive Link to Nucleotide Sequence:NM_001322076.2Link to Protein Sequence:NP_001309005.1Re-query CCDS DB by Nucleotide ID:NM_001322076Re-query CCDS DB by Protein ID:NP_001309005Link to BLAST:NP_001309005.1
Original member Current member NCBI NM_001387854.1 NP_001374783.1 Accepted alive Link to Nucleotide Sequence:NM_001387854.1Link to Protein Sequence:NP_001374783.1Re-query CCDS DB by Nucleotide ID:NM_001387854Re-query CCDS DB by Protein ID:NP_001374783Link to BLAST:NP_001374783.1
Original member Current member NCBI NM_001387855.1 NP_001374784.1 Accepted alive Link to Nucleotide Sequence:NM_001387855.1Link to Protein Sequence:NP_001374784.1Re-query CCDS DB by Nucleotide ID:NM_001387855Re-query CCDS DB by Protein ID:NP_001374784Link to BLAST:NP_001374784.1
Original member Current member NCBI NM_001387856.1 NP_001374785.1 Accepted alive Link to Nucleotide Sequence:NM_001387856.1Link to Protein Sequence:NP_001374785.1Re-query CCDS DB by Nucleotide ID:NM_001387856Re-query CCDS DB by Protein ID:NP_001374785Link to BLAST:NP_001374785.1
Original member Current member NCBI NM_001387858.1 NP_001374787.1 Accepted alive Link to Nucleotide Sequence:NM_001387858.1Link to Protein Sequence:NP_001374787.1Re-query CCDS DB by Nucleotide ID:NM_001387858Re-query CCDS DB by Protein ID:NP_001374787Link to BLAST:NP_001374787.1

Chromosomal Locations for CCDS 82403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56221575 56222323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56222591 56222741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56223631 56223834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56224663 56225046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGCTGCAAATTGCACATCCTCATGGAGTCTAGGAGAATCCTGCAACAGACCTGGGTTGGAGCTGCCAC
GGTCTATGGCATCCTCAGAAACTCAACTTGGAAATCACGACGTGGACCCTGAGATTTCTCACGTGAACTT
CAGGATGTTCAGCTGCCCGAAGGAGTCGGACCCCATCCAGGCTCTGAGGAAACTCACTGAGCTGTGCCAT
CTGTGGCTGAGGCCCGACCTCCACACCAAAGAGCAGATCCTGGACATGCTGGTGATGGAGCAGTTCATGA
TCTCCATGCCCCAGGAGCTCCAGGTCTTAGTCATGATGAACGGTGTGCAGAGCTGCAAAGACCTGGAGGA
CCTGCTACGAAATAACAGAAGACCCAAGAAATGGTCTGTGGTCACCTTCCACGGAAAGGAATATATTGTG
CAGGACTCAGATATCGAGATGGCTGAAGCCCCCTCCAGTGTCAGAGATGATCTGAAAGACGTGTCCAGCC
AACGGGCCTCCTCGGTGAACCAGATGCGTCCAGGGGAAGGCCAGGCCCACCGAGAGCTGCAGATCCTGCC
CAGGGTCCCTGCATTGTCCAGGAGGCAGGGAGAGGACTTTCTGCTACACAAGAGTATTGACGTAACAGGT
GACCCAAAGTCTCTGAGACCCAAGCAGACCTTGGAGAAGGATCTGAAGGAAAACAGGGAAGAGAACCCAG
GACTGACATCCCCAGAGCCTCAGCTTCCAAAGAGTCCCAATCTGGTGAGAGCAAAGGAGGGGAAGGACCC
CCCAAAAATAGCCTCTGTGGAAAATGTGGATGCTGACACACCTTCTGCCTGCGTTGTGGAGAGAGAAGCT
TCGACTCACAGCGGGAACAGAGGAGACGCTCTGAATCTGAGCAGTCCCAAAAGAAGCAAACCAGATGCCT
CCTCCATTTCCCAAGAAGAGCCTCAAGGAGAAGCCACACCTGTGGGCAACAGAGAATCCCCGGGACAAGC
TGGGATGAATTCAATTCATTCCCCAGGCCCTGCGAGCCCAGTCAGTCACCCGGATGGCCAAGAAGCCAAG
GCACTGCCGCCCTTTGCATGTGACGTGTGCGAGAAGAGGTTTACGTGTAATTCCAAGCTAGTCATCCACA
AGAGATCACACACAGGCGAGAGACTCTTTCAATGTAATCTCTGTGGGAAGCGCTTCATGCAGCTTATTAG
CCTCCAATTTCACCAGCGAACCCACACTGGCGAGAGGCCCTACACGTGTGACGTCTGCCAGAAGCAGTTC
ACCCAGAAGTCCTACTTGAAGTGTCACAAGAGAAGCCACACAGGGGAGAAGCCCTTCGAATGTAAAGACT
GCAAGAAAGTTTTCACCTACAGGGGGAGCCTGAAGGAGCACCAGCGCATCCACTCCGGAGAGAAACCCTA
CAAATGTTCCAAGTGTCCAAGAGCCTTCAGTCGGCTGAAATTGTTAAGACGCCACCAGAAAACACATCCA
GAAGCTACTTCTCAGTGA

Translation (495 aa):
MAANCTSSWSLGESCNRPGLELPRSMASSETQLGNHDVDPEISHVNFRMFSCPKESDPIQALRKLTELCH
LWLRPDLHTKEQILDMLVMEQFMISMPQELQVLVMMNGVQSCKDLEDLLRNNRRPKKWSVVTFHGKEYIV
QDSDIEMAEAPSSVRDDLKDVSSQRASSVNQMRPGEGQAHRELQILPRVPALSRRQGEDFLLHKSIDVTG
DPKSLRPKQTLEKDLKENREENPGLTSPEPQLPKSPNLVRAKEGKDPPKIASVENVDADTPSACVVEREA
STHSGNRGDALNLSSPKRSKPDASSISQEEPQGEATPVGNRESPGQAGMNSIHSPGPASPVSHPDGQEAK
ALPPFACDVCEKRFTCNSKLVIHKRSHTGERLFQCNLCGKRFMQLISLQFHQRTHTGERPYTCDVCQKQF
TQKSYLKCHKRSHTGEKPFECKDCKKVFTYRGSLKEHQRIHSGEKPYKCSKCPRAFSRLKLLRRHQKTHP
EATSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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