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Report for CCDS82379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82379.1 Public Homo sapiens 19 PTOV1 24 110 108 CCDS HistoryNCBI Gene:53635Re-query CCDS DB by CCDS ID:82379.1Re-query CCDS DB by GeneID:53635See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600603.5 ENSP00000471458.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600603.5Link to Ensembl Protein Viewer:ENSP00000471458.1Re-query CCDS DB by Nucleotide ID:ENST00000600603Re-query CCDS DB by Protein ID:ENSP00000471458
Original member Current member NCBI NM_001305108.2 NP_001292037.1 Accepted alive Link to Nucleotide Sequence:NM_001305108.2Link to Protein Sequence:NP_001292037.1Re-query CCDS DB by Nucleotide ID:NM_001305108Re-query CCDS DB by Protein ID:NP_001292037Link to BLAST:NP_001292037.1

Chromosomal Locations for CCDS 82379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49850881 49850955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854406 49854543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854652 49854734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854831 49854888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49854970 49855077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49856975 49857130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49857693 49857782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49857904 49857977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49858057 49858114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49858549 49858653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49860056 49860183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49860268 49860319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGAGGTCTCCCGCCGTCCCGACCCCCGCAAGGGGCCAGCTTGGTGTCGCCTTCGTTCTTCTGCCACCCC
ATTCGGAAGGTGCTCGGGTCTTCGGGGCACTGGGTCCCATCGGTCCCTCCTCACCTGGGCTCACCCTCGG
GGGTCTGGCCGTGAGCGAGCACCGGCTCAGCAACAAGCTGCTGGCTTGGAGCGGCGTCCTCGAGTGGCAG
GAGAAGCGCAGACCCTACTCTGACTCCACTGCAAAGCTGAAGCGGACCCTGCCCTGCCAAGCCTACGTGA
ACCAAGGCGAGAACCTGGAGACCGACCAGTGGCCGCAGAAGCTGATCATGCAGCTGATCCCTCAGCAGCT
GCTGACCACCCTGGGCCCCCTGTTCCGGAACTCCCAGTTGGCACAGTTCCACTTCACCAACAGAGACTGC
GACTCGCTCAAGGGGCTCTGCCGCATCATGGGCAACGGCTTCGCGGGCTGCATGCTGTTCCCCCACATCT
CCCCCTGTGAGGTGCGCGTGCTCATGCTCCTGTACTCGTCCAAGAAGAAGATCTTCATGGGCCTCATCCC
CTACGACCAGAGCGGCTTCGTCAGTGCCATCCGGCAGGTCATCACCACCCGCAAGCAGGCAGTGGGACCT
GGTGGTGTCAACTCAGGCCCAGTCCAGATCGTCAACAACAAGTTTCTGGCATGGAGTGGTGTCATGGAGT
GGCAGGAGCCCAGGCCTGAGCCCAACAGTCGGTCCAAGAGGTGGCTGCCATCCCACGTCTACGTGAACCA
GGGGGAGATCCTGAGGACCGAGCAGTGGCCAAGGAAGCTGTACATGCAGCTCATCCCGCAGCAGCTGCTG
ACCACCCTAGTGCCGCTGTTCCGGAACTCGCGCCTGGTCCAGTTCCACTTCACCAAGGACCTGGAGACAC
TGAAGAGCCTGTGCCGGATCATGGACAATGGCTTCAGAAGAAAATCTTCATTGGCCTCATCCCCCATGAC
CAGGGCAACTTTGTCAACGGCATCCGGCGTGTCATTGCCAACCAGCAGCAGGTCCTGCAGCGGAACCTGG
AGCAGGAGCAACAGCAACGAGGGATGGGGGGGTAGTGGTTACCCCGGGCTGGGCCCCTCCAGGAGTCACA
GATGA

Translation (374 aa):
MRSPAVPTPARGQLGVAFVLLPPHSEGARVFGALGPIGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQ
EKRRPYSDSTAKLKRTLPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDC
DSLKGLCRIMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAVGP
GGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHVYVNQGEILRTEQWPRKLYMQLIPQQLL
TTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFRRKSSLASSPMTRATLSTASGVSLPTSSRSCSGTW
SRSNSNEGWGGSGYPGLGPSRSHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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