NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8231.1 Public Homo sapiens 11 PGM2L1 24 110 108 CCDS HistoryNCBI Gene:283209Re-query CCDS DB by CCDS ID:8231.1Re-query CCDS DB by GeneID:283209See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298198.5 ENSP00000298198.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298198.5Link to Ensembl Protein Viewer:ENSP00000298198.4Re-query CCDS DB by Nucleotide ID:ENST00000298198Re-query CCDS DB by Protein ID:ENSP00000298198
Original member Current member NCBI NM_173582.6 NP_775853.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173582.6Link to Protein Sequence:NP_775853.2Re-query CCDS DB by Nucleotide ID:NM_173582Re-query CCDS DB by Protein ID:NP_775853Link to BLAST:NP_775853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775853.2 622 Q6PCE3 622 100% 0 0

Chromosomal Locations for CCDS 8231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74336652 74336754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74338468 74338601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74342461 74342650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74342885 74343014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74343323 74343416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74345469 74345649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74346732 74346829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74347148 74347337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74351383 74351576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74368492 74368575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74370902 74370986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74371711 74371817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74374415 74374582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74398051 74398161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGCTGAAAACACAGAGGGGGATCTGAACTCCAACCTGCTCCACGCCCCCTACCACACCGGGGACCCTC
AGCTGGACACGGCCATCGGGCAGTGGCTCCGCTGGGATAAGAATCCCAAAACAAAAGAGCAGATTGAAAA
CCTGTTACGGAATGGGATGAACAAGGAGCTGCGAGATCGTCTTTGTTGCCGAATGACTTTTGGGACTGCA
GGACTTCGTTCTGCCATGGGGGCAGGGTTTTGCTATATTAATGACCTTACAGTAATACAGTCAACACAGG
GGATGTACAAATACCTTGAGAGATGTTTCTCAGACTTCAAGCAGAGAGGCTTTGTGGTTGGGTATGACAC
TCGGGGTCAAGTAACTAGCAGCTGCAGCAGCCAGAGGCTTGCTAAACTCACTGCTGCAGTCTTGCTGGCC
AAAGATGTTCCTGTGTACCTTTTTTCAAGATATGTTCCTACACCTTTTGTACCATATGCAGTTCAGAAGC
TCAAAGCAGTTGCAGGTGTGATGATTACTGCCTCTCACAACCGCAAGGAAGACAATGGATACAAGGTTTA
CTGGGAAACTGGTGCTCAGATCACATCTCCTCATGATAAAGAAATTCTAAAATGTATAGAAGAATGTGTG
GAACCCTGGAATGGTTCCTGGAATGATAATTTAGTGGATACCAGCCCGCTGAAGAGAGACCCTCTGCAGG
ACATTTGCAGGAGATACATGGAAGATCTGAAAAAGATCTGTTTTTACAGGGAGTTAAACTCGAAGACCAC
CTTGAAATTTGTGCACACATCTTTTCATGGGGTCGGACATGACTATGTGCAGTTGGCTTTTAAAGTGTTT
GGTTTTAAGCCTCCAATTCCAGTACCAGAACAAAAAGATCCTGATCCAGACTTTTCTACCGTTAAATGTC
CAAATCCTGAAGAAGGAGAATCTGTGCTGGAACTTTCCTTGAGACTGGCAGAGAAAGAAAATGCCCGGGT
AGTGCTAGCCACAGATCCTGATGCAGACAGACTGGCAGCAGCAGAACTTCAGGAGAATGGTTGTTGGAAA
GTTTTCACAGGGAATGAGTTGGCAGCTTTGTTTGGATGGTGGATGTTTGATTGCTGGAAGAAAAATAAAT
CAAGAAATGCTGATGTGAAGAACGTTTATATGTTAGCCACCACAGTCTCTTCTAAAATTCTGAAGGCAAT
TGCACTTAAAGAAGGATTTCATTTTGAAGAAACATTACCAGGTTTTAAATGGATTGGAAGTAGGATAATA
GACCTCCTGGAAAATGGGAAAGAAGTCCTTTTTGCATTTGAAGAGTCTATTGGTTTTCTCTGTGGAACTT
CAGTTTTGGATAAAGATGGGGTGAGTGCAGCTGTTGTGGTTGCTGAGATGGCATCTTACCTGGAAACCAT
GAATATAACATTGAAACAGCAACTGGTTAAGGTTTATGAAAAATATGGTTATCATATTTCAAAAACTTCC
TATTTCTTGTGTTATGAACCACCTACCATCAAAAGTATATTTGAAAGGCTTCGTAATTTTGATTCTCCAA
AAGAATATCCAAAATTTTGTGGAACATTTGCTATATTGCATGTACGGGACGTTACCACTGGATATGACAG
TAGCCAGCCTAATAAGAAATCAGTGCTGCCTGTGAGTAAAAACAGCCAAATGATTACATTTACTTTTCAA
AATGGCTGTGTTGCTACCCTTCGGACAAGTGGAACAGAACCAAAGATAAAGTATTATGCAGAGATGTGTG
CGTCACCTGACCAGAGTGACACTGCTTTACTGGAGGAAGAACTGAAGAAACTCATTGATGCTCTGATAGA
GAATTTTCTTCAGCCTAGTAAGAATGGACTGATCTGGCGTTCTGTTTAG

Translation (622 aa):
MAENTEGDLNSNLLHAPYHTGDPQLDTAIGQWLRWDKNPKTKEQIENLLRNGMNKELRDRLCCRMTFGTA
GLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFKQRGFVVGYDTRGQVTSSCSSQRLAKLTAAVLLA
KDVPVYLFSRYVPTPFVPYAVQKLKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKEILKCIEECV
EPWNGSWNDNLVDTSPLKRDPLQDICRRYMEDLKKICFYRELNSKTTLKFVHTSFHGVGHDYVQLAFKVF
GFKPPIPVPEQKDPDPDFSTVKCPNPEEGESVLELSLRLAEKENARVVLATDPDADRLAAAELQENGCWK
VFTGNELAALFGWWMFDCWKKNKSRNADVKNVYMLATTVSSKILKAIALKEGFHFEETLPGFKWIGSRII
DLLENGKEVLFAFEESIGFLCGTSVLDKDGVSAAVVVAEMASYLETMNITLKQQLVKVYEKYGYHISKTS
YFLCYEPPTIKSIFERLRNFDSPKEYPKFCGTFAILHVRDVTTGYDSSQPNKKSVLPVSKNSQMITFTFQ
NGCVATLRTSGTEPKIKYYAEMCASPDQSDTALLEEELKKLIDALIENFLQPSKNGLIWRSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH