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Report for CCDS8225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8225.1 Public Homo sapiens 11 COA4 24 110 108 CCDS HistoryNCBI Gene:51287Re-query CCDS DB by CCDS ID:8225.1Re-query CCDS DB by GeneID:51287See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8225.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355693.5 ENSP00000347919.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355693.5Link to Ensembl Protein Viewer:ENSP00000347919.4Re-query CCDS DB by Nucleotide ID:ENST00000355693Re-query CCDS DB by Protein ID:ENSP00000347919
Original member Current member EBI ENST00000537289.1 ENSP00000437772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537289.1Link to Ensembl Protein Viewer:ENSP00000437772.1Re-query CCDS DB by Nucleotide ID:ENST00000537289Re-query CCDS DB by Protein ID:ENSP00000437772
Original member Current member EBI ENST00000545127.1 ENSP00000443795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545127.1Link to Ensembl Protein Viewer:ENSP00000443795.1Re-query CCDS DB by Nucleotide ID:ENST00000545127Re-query CCDS DB by Protein ID:ENSP00000443795
Original member Current member NCBI NM_016565.3 NP_057649.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016565.3Link to Protein Sequence:NP_057649.2Re-query CCDS DB by Nucleotide ID:NM_016565Re-query CCDS DB by Protein ID:NP_057649Link to BLAST:NP_057649.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057649.2 87 Q9NYJ1-1 87 100% 0 0

Chromosomal Locations for CCDS 8225.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73873115 73873378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGTCAACCTCAGTCCCTCAAGGCCATACCTGGACCCAACGGGTGAAGAAAGACGATGAGGAGGAGGACC
CGCTGGACCAGCTGATCTCCCGCTCTGGCTGTGCTGCCTCCCACTTTGCAGTGCAGGAGTGCATGGCCCA
GCACCAGGACTGGCGGCAATGCCAGCCACAGGTGCAGGCGTTCAAGGATTGCATGAGTGAACAGCAGGCG
AGGCGGCAAGAGGAGCTGCAGAGGAGGCAAGAACAAGCCGGTGCCCACCACTGA

Translation (87 aa):
MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQA
RRQEELQRRQEQAGAHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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