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Report for CCDS81946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81946.1 Public Homo sapiens 16 ALG1 24 110 108 CCDS HistoryNCBI Gene:56052Re-query CCDS DB by CCDS ID:81946.1Re-query CCDS DB by GeneID:56052See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544428.1 ENSP00000440019.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544428.1Link to Ensembl Protein Viewer:ENSP00000440019.1Re-query CCDS DB by Nucleotide ID:ENST00000544428Re-query CCDS DB by Protein ID:ENSP00000440019
Original member Current member EBI ENST00000588623.5 ENSP00000468118.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588623.5Link to Ensembl Protein Viewer:ENSP00000468118.1Re-query CCDS DB by Nucleotide ID:ENST00000588623Re-query CCDS DB by Protein ID:ENSP00000468118
Original member Current member EBI ENST00000683739.1 ENSP00000507002.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683739.1Link to Ensembl Protein Viewer:ENSP00000507002.1Re-query CCDS DB by Nucleotide ID:ENST00000683739Re-query CCDS DB by Protein ID:ENSP00000507002
Original member Current member NCBI NM_001330504.2 NP_001317433.1 Accepted alive Link to Nucleotide Sequence:NM_001330504.2Link to Protein Sequence:NP_001317433.1Re-query CCDS DB by Nucleotide ID:NM_001330504Re-query CCDS DB by Protein ID:NP_001317433Link to BLAST:NP_001317433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317433.1 353 Q9BT22-2 353 100% 0 0

Chromosomal Locations for CCDS 81946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5073200 5073256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5075388 5075536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5077445 5077534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5077907 5078017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5078757 5078878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5079064 5079102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5079748 5079807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5080946 5081056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5082559 5082673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5083682 5083757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5084750 5084881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGTACTTGCTGTGGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTTCTCCAGAACCCCCCAGGTC
TGCCTAGCATTGCTGTCTGCTGGTTCGTGGGCTGCCTTTGTGGAAGCAAGCTCGTCATTGACTGGCACAA
CTATGGCTACTCCATCATGGGTCTGGTGCATGGCCCCAACCATCCCCTCGTTCTGCTGGCCAAGTGGTAC
GAGAAGTTCTTTGGGCGCCTGTCCCACCTGAACCTGTGTGTTACCAATGCTATGCGAGAAGACCTGGCGG
ATAACTGGCACATCAGGGCTGTGACCGTCTACGACAAGCCCGCATCTTTCTTTAAAGAGACACCTCTGGA
CCTGCAGCACCGGCTCTTCATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGCTCAGAACCTGAG
GACCCAGTCACGGAGCGGTCGGCCTTCACGGAGCGGGATGCTGGGAGCGGGCTGGTGACGCGTCTCCGTG
AGCGGCCAGCCCTGCTGGTCAGCAGCACGAGCTGGACAGAGGACGAAGACTTCTCCATCCTGCTGGCAGC
TTTAGAAAAGTTTGAACAACTGACTCTTGATGGACACAACCTTCCTTCTCTCGTCTGTGTGATAACAGGC
AAAGGGCCTCTGAGGGAGTATTATAGCCGCCTCATCCACCAGAAGCACTTCCAGCACATCCAGGTCTGCA
CCCCCTGGCTGGAGGCCGAGGACTACCCCCTGCTTCTAGGGTCGGCGGACCTGGGTGTCTGTCTGCACAC
GTCCTCCAGTGGCCTGGACCTGCCCATGAAGGTGGTGGACATGTTCGGGTGCTGTTTGCCTGTGTGTGCT
GTGAACTTCAAGTGTTTACATGAGCTGGTGAAACATGAAGAAAATGGCCTGGTCTTTGAGGACTCAGAGG
AACTGGCAGCTCAGCTGCAGATGCTTTTCTCAAACTTTCCTGATCCTGCGGGCAAGCTAAACCAGTTCCG
GAAGAACCTGCGGGAGTCGCAGCAGCTCCGATGGGATGAGAGCTGGGTGCAGACTGTGCTCCCTTTGGTT
ATGGACACATAA

Translation (353 aa):
MYLLWKLMWREPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWY
EKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPE
DPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCCLPVCA
VNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLV
MDT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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