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Report for CCDS8168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8168.1 Public Homo sapiens 11 AIP 24 110 108 CCDS HistoryNCBI Gene:9049Re-query CCDS DB by CCDS ID:8168.1Re-query CCDS DB by GeneID:9049See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279146.8 ENSP00000279146.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279146.8Link to Ensembl Protein Viewer:ENSP00000279146.3Re-query CCDS DB by Nucleotide ID:ENST00000279146Re-query CCDS DB by Protein ID:ENSP00000279146
Original member Current member NCBI NM_003977.4 NP_003968.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003977.4Link to Protein Sequence:NP_003968.3Re-query CCDS DB by Nucleotide ID:NM_003977Re-query CCDS DB by Protein ID:NP_003968Link to BLAST:NP_003968.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003968.3 330 O00170 330 100% 0 0

Chromosomal Locations for CCDS 8168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67483159 67483257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67487006 67487185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67489267 67489455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67490038 67490214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67490316 67490457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67490788 67490993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGCGGATATCATCGCAAGACTCCGGGAGGACGGGATCCAAAAACGTGTGATACAGGAAGGCCGAGGAG
AGCTCCCGGACTTTCAAGATGGGACCAAGGCCACGTTCCACTACCGGACGCTGCACAGTGACGACGAGGG
CACCGTGCTGGACGACAGCCGGGCTCGTGGCAAGCCCATGGAGCTCATCATTGGCAAGAAGTTCAAGCTG
CCTGTGTGGGAGACCATCGTGTGCACCATGCGAGAAGGGGAGATTGCCCAGTTCCTCTGTGACATCAAGC
ATGTGGTCCTGTACCCGCTGGTGGCCAAGAGTCTCCGCAACATCGCGGTGGGCAAGGACCCCCTGGAGGG
CCAGCGGCACTGCTGCGGTGTTGCACAGATGCGTGAACACAGCTCCCTGGGCCATGCTGACCTGGACGCC
CTGCAGCAGAACCCCCAGCCCCTCATCTTCCACATGGAGATGCTGAAGGTGGAGAGCCCTGGCACGTACC
AGCAGGACCCATGGGCCATGACAGACGAAGAGAAGGCAAAGGCAGTGCCACTTATCCACCAGGAGGGCAA
CCGGTTGTACCGCGAGGGGCATGTGAAGGAGGCTGCTGCCAAGTACTACGATGCCATTGCCTGCCTCAAG
AACCTGCAGATGAAGGAACAGCCTGGGTCCCCTGAATGGATCCAGCTGGACCAGCAGATCACGCCGCTGC
TGCTCAACTACTGCCAGTGCAAGCTGGTGGTCGAGGAGTACTACGAGGTGCTGGACCACTGCTCTTCCAT
CCTCAACAAGTACGACGACAACGTCAAGGCCTACTTCAAGCGGGGCAAGGCCCACGCGGCCGTGTGGAAT
GCCCAGGAGGCCCAGGCTGACTTTGCCAAAGTGCTGGAGCTGGACCCAGCCCTGGCGCCTGTGGTGAGCC
GAGAGCTGCGGGCCCTGGAGGCACGGATCCGGCAGAAGGACGAAGAGGACAAAGCCCGGTTCCGGGGGAT
CTTCTCCCATTGA

Translation (330 aa):
MADIIARLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKL
PVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDA
LQQNPQPLIFHMEMLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLK
NLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWN
AQEAQADFAKVLELDPALAPVVSRELRALEARIRQKDEEDKARFRGIFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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