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Report for CCDS8138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8138.1 Public Homo sapiens 11 NPAS4 24 110 108 CCDS HistoryNCBI Gene:266743Re-query CCDS DB by CCDS ID:8138.1Re-query CCDS DB by GeneID:266743See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311034.7 ENSP00000311196.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311034.7Link to Ensembl Protein Viewer:ENSP00000311196.2Re-query CCDS DB by Nucleotide ID:ENST00000311034Re-query CCDS DB by Protein ID:ENSP00000311196
Original member Current member NCBI NM_178864.4 NP_849195.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178864.4Link to Protein Sequence:NP_849195.2Re-query CCDS DB by Nucleotide ID:NM_178864Re-query CCDS DB by Protein ID:NP_849195Link to BLAST:NP_849195.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849195.2 802 Q8IUM7-1 802 100% 0 0

Chromosomal Locations for CCDS 8138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66421180 66421354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66422120 66422271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66422451 66422553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66422674 66422941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66423123 66423232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66423578 66423713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66423835 66425270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66425961 66425989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGTACCGCTCCACCAAGGGCGCCTCCAAGGCGCGCCGGGACCAGATCAACGCCGAGATCCGGAACCTCA
AGGAGCTGCTGCCGCTGGCCGAAGCGGACAAGGTCCGGCTGTCCTACCTGCACATCATGAGCCTCGCCTG
CATCTACACTCGCAAGGGCGTCTTCTTCGCTGGTGGCACTCCTCTGGCGGGCCCCACGGGGCTTCTCTCA
GCTCAAGAGCTTGAGGACATCGTAGCGGCACTACCCGGCTTTCTGCTTGTGTTCACAGCCGAGGGGAAAT
TGCTCTACCTGTCTGAGAGTGTGAGCGAGCATCTGGGCCACTCCATGGTGGACCTGGTTGCCCAGGGTGA
CAGCATCTACGACATCATTGACCCAGCTGACCACCTCACTGTGCGCCAGCAACTCACCCTGCCCTCTGCC
CTGGACACTGATCGCCTCTTCCGCTGCCGCTTCAACACCTCCAAGTCCCTCAGGCGCCAGAGTGCAGGCA
ACAAACTCGTGCTTATTCGAGGCCGATTCCATGCTCACCCACCTGGAGCCTACTGGGCAGGAAATCCCGT
GTTCACAGCTTTCTGTGCCCCTCTGGAGCCGAGACCCCGCCCAGGTCCTGGCCCTGGCCCTGGCCCTGCC
TCGCTCTTCCTGGCCATGTTCCAGAGCCGCCATGCTAAAGACCTGGCTCTACTGGACATCTCCGAGAGTG
TCCTAATCTACCTGGGCTTTGAGCGCAGTGAACTGCTTTGTAAATCATGGTATGGACTGCTGCACCCCGA
GGACCTGGCCCACGCTTCTGCTCAACACTACCGCCTGTTGGCTGAGAGTGGAGATATTCAGGCAGAGATG
GTGGTGAGGCTACAGGCCAAGACTGGAGGCTGGGCATGGATTTACTGCCTGTTATACTCAGAAGGTCCAG
AGGGACCCATTACTGCCAATAACTACCCAATCAGTGACATGGAAGCCTGGAGCCTCCGCCAGCAGTTGAA
CTCTGAAGACACCCAGGCAGCTTATGTCCTGGGCACTCCGACCATGCTGCCCTCATTCCCTGAAAACATT
CTTTCCCAGGAAGAGTGCTCCAGCACTAACCCACTCTTCACCGCAGCACTGGGGGCTCCCAGAAGCACCA
GCTTCCCCAGTGCTCCTGAACTGAGTGTTGTCTCTGCATCAGAAGAGCTTCCCCGACCCTCCAAAGAACT
GGACTTCAGTTACCTGACATTCCCTTCTGGGCCTGAGCCTTCTCTCCAAGCAGAACTAAGCAAGGATCTT
GTGTGCACTCCACCTTACACGCCCCATCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAGCCCT
TCCAGACCCATTTGCCCACCCCATCCAGCACTCTTCAAGAACAGCTGACTCCAAGCACTGCGACCTTCTC
TGATCAGTTGACGCCCAGCAGTGCAACCTTCCCAGATCCACTAACTAGCCCACTGCAAGGCCAGTTGACT
GAAACCTCGGTCAGAAGCTATGAAGACCAGTTGACTCCCTGCACCTCCACCTTCCCAGACCAGCTGCTTC
CCAGCACAGCCACCTTCCCAGAGCCTCTGGGCAGCCCTGCCCATGAACAGCTGACTCCTCCCAGCACAGC
ATTCCAAGCACACCTGGACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAACCCTACCAAGACT
TACTTTGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATG
GGGACTGCACGCTCTTGGCCCTAGCCCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGA
AGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAGAGTTTCTTCCACTACTCTGAAAAGGAGCAGAAT
GAGATAGACCGTCTCATCCAGCAGATTAGCCAATTGGCTCAGGGCATGGACAGACCCTTCTCAGCTGAGG
CTGGCACTGGCGGACTAGAGCCACTTGGAGGACTGGAGCCCCTGGACTCCAACCTGTCCCTGTCAGGGGC
AGGCCCCCCTGTGCTCAGCCTGGACCTGAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGCTGACCCT
GATAACATGTTCCTGGAAGAGACGCCCGTGGAAGACATCTTCATGGATCTCTCTACCCCAGATCCCAGTG
AGGAATGGGGCTCAGGGGATCCTGAGGCAGAGGGCCCAGGAGGGGCCCCATCGCCTTGCAACAACCTGTC
CCCAGAAGACCACAGCTTCCTGGAGGACCTGGCCACATATGAAACCGCCTTTGAGACAGGTGTCTCAGCA
TTCCCCTATGATGGGTTTACTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG
ATGGAAGTGGAGGGGAACCAACGTTTTGA

Translation (802 aa):
MYRSTKGASKARRDQINAEIRNLKELLPLAEADKVRLSYLHIMSLACIYTRKGVFFAGGTPLAGPTGLLS
AQELEDIVAALPGFLLVFTAEGKLLYLSESVSEHLGHSMVDLVAQGDSIYDIIDPADHLTVRQQLTLPSA
LDTDRLFRCRFNTSKSLRRQSAGNKLVLIRGRFHAHPPGAYWAGNPVFTAFCAPLEPRPRPGPGPGPGPA
SLFLAMFQSRHAKDLALLDISESVLIYLGFERSELLCKSWYGLLHPEDLAHASAQHYRLLAESGDIQAEM
VVRLQAKTGGWAWIYCLLYSEGPEGPITANNYPISDMEAWSLRQQLNSEDTQAAYVLGTPTMLPSFPENI
LSQEECSSTNPLFTAALGAPRSTSFPSAPELSVVSASEELPRPSKELDFSYLTFPSGPEPSLQAELSKDL
VCTPPYTPHQPGGCAFLFSLHEPFQTHLPTPSSTLQEQLTPSTATFSDQLTPSSATFPDPLTSPLQGQLT
ETSVRSYEDQLTPCTSTFPDQLLPSTATFPEPLGSPAHEQLTPPSTAFQAHLDSPSQTFPEQLSPNPTKT
YFAQEGCSFLYEKLPPSPSSPGNGDCTLLALAQLRGPLSVDVPLVPEGLLTPEASPVKQSFFHYSEKEQN
EIDRLIQQISQLAQGMDRPFSAEAGTGGLEPLGGLEPLDSNLSLSGAGPPVLSLDLKPWKCQELDFLADP
DNMFLEETPVEDIFMDLSTPDPSEEWGSGDPEAEGPGGAPSPCNNLSPEDHSFLEDLATYETAFETGVSA
FPYDGFTDELHQLQSQVQDSFHEDGSGGEPTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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