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Report for CCDS81167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81167.1 Public Mus musculus X Cldn34c1 23 108 98 CCDS HistoryNCBI Gene:73061Re-query CCDS DB by CCDS ID:81167.1Re-query CCDS DB by GeneID:73061See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113343.7 ENSMUSP00000108970.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113343.7Link to Ensembl Protein Viewer:ENSMUSP00000108970.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113343Re-query CCDS DB by Protein ID:ENSMUSP00000108970
Original member Current member NCBI NM_001310654.1 NP_001297583.1 Accepted alive Link to Nucleotide Sequence:NM_001310654.1Link to Protein Sequence:NP_001297583.1Re-query CCDS DB by Nucleotide ID:NM_001310654Re-query CCDS DB by Protein ID:NP_001297583Link to BLAST:NP_001297583.1

Chromosomal Locations for CCDS 81167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 123142632 123143270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGTCCTGCTAAACAAGTCTGCCAATCACCAAATAAGAGGTTTCACTTTAGCTACAATAGCATGCATAA
TGTGCAATACCTCTATGGCCCTTCCAGAATGGCGAATTTGCTACTTGAACAACTCCATGCTTTCCTACCC
AAGTCTGGCTTTTGTGAATATTTGGGAGGCCTACATCTGCCACCACAACCACAACTCAAGCCACCTGAGA
GATTGCCATTACTACACCTGCCATAACAACCTTGTTCCTTTGGATATCCGGGTATCTCAAATTCTGCTCC
AGGTTGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTCTTTGCTCTACAGCAGTTATACACAGA
GGAACTGCATAAGAATAATGACTACAATCCATTTGTTCTTTCAGCTGTCCTCAATGCTATTGCTAGCACC
TTTATTTTTCTTGCTGTTATGTGTAATCACCTCTCCGTGCCCAGCAAGGAAGAGGTATCTTTCCTGCAAT
CTTTCCAAATGCCAATTTTTTCCAATGCTCAAAGAGCAGGCAGAGCCATGGGATTGGCATACATATCTGC
CATATTGTTTTTATTAAGTGCTATAATTTTTATTTCTTACTGTCCTTCAATGGAAATCAAAATGTTTCCC
CGTGTCTGA

Translation (212 aa):
MVLLNKSANHQIRGFTLATIACIMCNTSMALPEWRICYLNNSMLSYPSLAFVNIWEAYICHHNHNSSHLR
DCHYYTCHNNLVPLDIRVSQILLQVANVVGLVGTVCSVFALQQLYTEELHKNNDYNPFVLSAVLNAIAST
FIFLAVMCNHLSVPSKEEVSFLQSFQMPIFSNAQRAGRAMGLAYISAILFLLSAIIFISYCPSMEIKMFP
RV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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