NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80456.1 Public Mus musculus 5 Spdye4a 23 108 98 CCDS HistoryNCBI Gene:74673Re-query CCDS DB by CCDS ID:80456.1Re-query CCDS DB by GeneID:74673See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160502.1 ENSMUSP00000123959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160502.1Link to Ensembl Protein Viewer:ENSMUSP00000123959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160502Re-query CCDS DB by Protein ID:ENSMUSP00000123959
Original member Current member NCBI NM_001310757.1 NP_001297686.1 Accepted alive Link to Nucleotide Sequence:NM_001310757.1Link to Protein Sequence:NP_001297686.1Re-query CCDS DB by Nucleotide ID:NM_001310757Re-query CCDS DB by Protein ID:NP_001297686Link to BLAST:NP_001297686.1

Chromosomal Locations for CCDS 80456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143218719 143218773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143221338 143221423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143221980 143222038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143224881 143225099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143226625 143226727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGATGCCAGTGAAATTTCCTCACAGTCTGGGGAACAGTGTCCCCAGCTGAGCACCACGATAGCCTCAC
CAGTGATGGATGGTGCTATCCCAGCATTATCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAG
CATCCAAAAGAGGAAGAGGGACGAGTCATTAGATTCTGAGGATGACCTGGCAGAGCTATTTGAACCTGAT
CCCCAGCCAGTGTGGTCAGTGGAGATGCTGTGCGGACTTAGGATGAGGCTGAAGAGGCGACGTGTGTCTA
CAGTGAGGCCTGAACACCACAAGGTCTTCACCAAGCTGCTCGAGGATCCTGTGGTGAAAAAATTCCTGAC
CTGGGACAAGATGCTGAGGGTGTCAGACAAGTACCTCCTGTCTATGGTCATAGCTTATTTCAGCCGCGCT
GGGCTCTTCTCCTGGCAGTACAGGCCCATCCACTTCTTCCTGGCTCTATCCAGGCTTACAATCCAGACCT
TTGGGTGTGGGCACGAGATCGCACCAACCTGA

Translation (173 aa):
MDASEISSQSGEQCPQLSTTIASPVMDGAIPALSEPRVEATPQPPSSIQKRKRDESLDSEDDLAELFEPD
PQPVWSVEMLCGLRMRLKRRRVSTVRPEHHKVFTKLLEDPVVKKFLTWDKMLRVSDKYLLSMVIAYFSRA
GLFSWQYRPIHFFLALSRLTIQTFGCGHEIAPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH