NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80368.1 Public Mus musculus 5 Pitpnb 23 108 98 CCDS HistoryNCBI Gene:56305Re-query CCDS DB by CCDS ID:80368.1Re-query CCDS DB by GeneID:56305See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200298.1 ENSMUSP00000142732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200298.1Link to Ensembl Protein Viewer:ENSMUSP00000142732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200298Re-query CCDS DB by Protein ID:ENSMUSP00000142732
Original member Current member NCBI NM_001301643.1 NP_001288572.1 Accepted alive Link to Nucleotide Sequence:NM_001301643.1Link to Protein Sequence:NP_001288572.1Re-query CCDS DB by Nucleotide ID:NM_001301643Re-query CCDS DB by Protein ID:NP_001288572Link to BLAST:NP_001288572.1

Chromosomal Locations for CCDS 80368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 111330814 111330833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111335495 111335525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111338283 111338428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111346483 111346574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111347120 111347127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111347781 111347855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111349491 111349574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111371312 111371389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111380192 111380302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111382988 111383110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111386503 111386553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGTGCTGATTAAGGAATTCCGTGTGGTTTTGCCGTGTTCTGTTCAAGAGTATCAGGTTGGACAGCTTT
ACTCTGTTGCAGAAGCGAGTAAGAATGAAACTGGTGGTGGAGAAGGAATCGAAGTCCTGAAGAATGAACC
TTATGAAAACGATGGCGAGAAGGGACAGTACACACACAAAATCTACCACCTGAAGAGCAAAGTTCCTGCA
TTTGTGAGGATGATTGCTCCCGAGGGCTCCCTGGTGTTTCATGAGAAAGCCTGGAATGCCTACCCCTACT
GCAGAACAATTGTAACGAATGAATACATGAAAGATGACTTCTTCATCAAAATTGAAACATGGCATAAACC
TGACTTGGGAACATTAGAAAATGTTCACGGTTTAGATCCCAACACTTGGAAAACTGTTGAAATTGTCCAC
ATAGACATTGCAGATCGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGATGAAGACCCTGCATTATTCC
ATTCAGTCAAGACCAAGAGAGGACCCCTGGGACCTAACTGGAAGAAGGAGCTGGCAAACACCCCTGACTG
TCCTAGGATGTGTGCCTATAAGCTGGTGACCATCAAGTTCAAGTGGTGGGGGCTGCAGAGCAAAGTAGAG
AACTTTATCCAGAAGCAAGAAAAACGGATATTTACGAACTTACATCGCCAGCTCTTTTGTTGGATTGACA
AGTGGATTGACCTGACAATGGAAGACATTAGGCGAATGGAGGATGAGACTCAGAAAGAACTAGAAACACT
ACGGAGTCAAGGCCAAGTGAGGGGGACCAGTGCGGCCTGTGATGACTGA

Translation (272 aa):
MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYENDGEKGQYTHKIYHLKSKVPA
FVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVH
IDIADRSQVEPADYKADEDPALFHSVKTKRGPLGPNWKKELANTPDCPRMCAYKLVTIKFKWWGLQSKVE
NFIQKQEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDETQKELETLRSQGQVRGTSAACDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH