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Report for CCDS80281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80281.1 Public Mus musculus 5 Lgi2 23 108 98 CCDS HistoryNCBI Gene:246316Re-query CCDS DB by CCDS ID:80281.1Re-query CCDS DB by GeneID:246316See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199942.4 ENSMUSP00000143707.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199942.4Link to Ensembl Protein Viewer:ENSMUSP00000143707.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199942Re-query CCDS DB by Protein ID:ENSMUSP00000143707
Original member Current member NCBI NM_001310604.1 NP_001297533.1 Accepted alive Link to Nucleotide Sequence:NM_001310604.1Link to Protein Sequence:NP_001297533.1Re-query CCDS DB by Nucleotide ID:NM_001310604Re-query CCDS DB by Protein ID:NP_001297533Link to BLAST:NP_001297533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297533.1 542 Q8K4Z0-2 542 100% 0 0

Chromosomal Locations for CCDS 80281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 52537963 52538780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52546453 52546617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52554403 52554572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52555662 52555733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52560163 52560234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52562126 52562197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52563966 52564037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52565918 52566105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGCGCTATGGAGAGGCGGCGGGGCGCTGGGGTTGCTGCTGCTGAGCGCCGCGTGCCTCATCCCGCCGA
GCGCGCAGGTGAGGCGGTTGGCGCGCTGCCCCGCCACTTGCAGCTGTACCAAGGAGTCCATCATCTGCGT
GGGCTCCTCTTGGGTGCCTAGGATCGTGCCTGGCGACATCAGCTCCCTGAGCCTAGTAAATGGAACATTT
CTGGAAATCAAGGACCGAATGTTTTCCCACCTGCCCTCTCTGCAGCTGCTATTGCTGAATTCTAACTCAT
TCACGGTGATCCGGGACGATGCCTTTGCTGGCCTTTTTCATCTTGAATACCTGTTCATTGAAGGGAACAA
AATAGAAACCATTTCAAGAAATGCCTTTCGGGGCCTCCGTGACCTGACTCACCTTTCCTTGGCCAACAAC
CACATAAAAGCACTTCCAAGGGACGTGTTCAGTGATCTGGACTCCCTCATTGAACTAGACTTAAGGGGTA
ATAAATTTGAATGTGACTGCAAAGCCAAATGGCTGTATCTATGGCTGAAGATGACAAACTCCACCGTCTC
TGATGTGCTGTGTATCGGTCCACCAGAATACCAGGAGAAGAAACTCAACGAAGTGACCAGCTTTGACTAT
GAGTGTACCACCACAGATTTTGTCGTTCATCAGACTCTGCCGTACCAGTCGGTGTCAGTAGACACGTTCA
ACTCCAAGAACGATGTGTACGTGGCCATCGCTCAGCCCAGCATGGAGAACTGCATGGTGTTGGAGTGGGA
CCACATAGAAATGAATTTCCGGAGTTATGACAATATCACAGGCCAGTCCATCGTGGGCTGCAAGGCCATC
CTCATTGACGACCAGGTCTTTGTGGTGGTGGCCCAGCTCTTCGGTGGCTCTCACATTTACAAATACGACG
AGAGCTGGACCAAGTTTGTCAAGTTCCAAGACATAGAGGTGTCTCGGATTTCCAAGCCCAACGACATTGA
GCTGTTCGAGATCGACGACGAGACCTTCTTCATCATCGCCGACAGCTCCAAAGCGGGGCTGTCCACAGTT
TACAAGTGGAACAGCAAAGGGTTTTACTCCTACCAGTCACTACATGAGTGGTTCAGGGACACAGATGCGG
AGTTTGTTGACATCGACGGGAAGTCTCACCTCATCCTGTCTAGCCGCTCCCAGGTCCCCATCATCCTGCA
GTGGAATAAAAGTTCCAAGAAGTTTGTCCCCCATGGTGACATCCCCAATATGGAGGATGTGCTGGCTGTG
AAGAGCTTCCGGATGCAGAACACCCTCTACCTTTCCCTCACCCGTTTCATTGGGGACTCGCGGGTCATGC
GTTGGAACAGTAAGCAGTTTGTGGAGGTCCAGGCTCTTCCTTCCCGGGGGGCTATGACCTTGCAACCCTT
CTCCTTCAAAGATAACCACTACCTGGCCCTGGGGAGTGACTACACGTTCTCACAGATCTACCAGTGGGAT
AAAGAGAAACAGCAGTTTAAAAAGTTTAAAGAAATCTATGTGCAGGCGCCTCGGTCCTTCACAGCCGTCT
CCACCGACAGGAGAGATTTCTTTTTTGCATCCAGTTTCAAAGGGAAGACAAAGATTTTTGAACATATCAT
TGTTGATTTAAGTTTGTGA

Translation (542 aa):
MALWRGGGALGLLLLSAACLIPPSAQVRRLARCPATCSCTKESIICVGSSWVPRIVPGDISSLSLVNGTF
LEIKDRMFSHLPSLQLLLLNSNSFTVIRDDAFAGLFHLEYLFIEGNKIETISRNAFRGLRDLTHLSLANN
HIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNEVTSFDY
ECTTTDFVVHQTLPYQSVSVDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAI
LIDDQVFVVVAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFEIDDETFFIIADSSKAGLSTV
YKWNSKGFYSYQSLHEWFRDTDAEFVDIDGKSHLILSSRSQVPIILQWNKSSKKFVPHGDIPNMEDVLAV
KSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEVQALPSRGAMTLQPFSFKDNHYLALGSDYTFSQIYQWD
KEKQQFKKFKEIYVQAPRSFTAVSTDRRDFFFASSFKGKTKIFEHIIVDLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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