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Report for CCDS8028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8028.1 Public Homo sapiens 11 LBHD1 24 110 108 CCDS HistoryNCBI Gene:79081Re-query CCDS DB by CCDS ID:8028.1Re-query CCDS DB by GeneID:79081See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354588.8 ENSP00000346600.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354588.8Link to Ensembl Protein Viewer:ENSP00000346600.3Re-query CCDS DB by Nucleotide ID:ENST00000354588Re-query CCDS DB by Protein ID:ENSP00000346600
Original member Current member EBI ENST00000532208.5 ENSP00000436848.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532208.5Link to Ensembl Protein Viewer:ENSP00000436848.1Re-query CCDS DB by Nucleotide ID:ENST00000532208Re-query CCDS DB by Protein ID:ENSP00000436848
Original member Current member NCBI NM_001367941.2 NP_001354870.1 Accepted alive Link to Nucleotide Sequence:NM_001367941.2Link to Protein Sequence:NP_001354870.1Re-query CCDS DB by Nucleotide ID:NM_001367941Re-query CCDS DB by Protein ID:NP_001354870Link to BLAST:NP_001354870.1
Original member Current member NCBI NM_001394609.1 NP_001381538.1 Accepted alive Link to Nucleotide Sequence:NM_001394609.1Link to Protein Sequence:NP_001381538.1Re-query CCDS DB by Nucleotide ID:NM_001394609Re-query CCDS DB by Protein ID:NP_001381538Link to BLAST:NP_001381538.1
Original member Current member NCBI NM_001394611.1 NP_001381540.1 Accepted alive Link to Nucleotide Sequence:NM_001394611.1Link to Protein Sequence:NP_001381540.1Re-query CCDS DB by Nucleotide ID:NM_001394611Re-query CCDS DB by Protein ID:NP_001381540Link to BLAST:NP_001381540.1
Original member Current member NCBI NM_001394612.1 NP_001381541.1 Accepted alive Link to Nucleotide Sequence:NM_001394612.1Link to Protein Sequence:NP_001381541.1Re-query CCDS DB by Nucleotide ID:NM_001394612Re-query CCDS DB by Protein ID:NP_001381541Link to BLAST:NP_001381541.1
Original member Current member NCBI NM_024099.5 NP_077004.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024099.5Link to Protein Sequence:NP_077004.2Re-query CCDS DB by Nucleotide ID:NM_024099Re-query CCDS DB by Protein ID:NP_077004Link to BLAST:NP_077004.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001354870.1 263 Q9BQE6-2 263 100% 0 0
NP_001381538.1 263 Q9BQE6-2 263 100% 0 0
NP_001381540.1 263 Q9BQE6-2 263 100% 0 0
NP_001381541.1 263 Q9BQE6-2 263 100% 0 0
NP_077004.2 263 Q9BQE6-2 263 100% 0 0

Chromosomal Locations for CCDS 8028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62663129 62663159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62663236 62663333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62664849 62664973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62667523 62667747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62669641 62669803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62669882 62670031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGCCCTTGTGCCAGGGAGAAGCAAGGAGGATGGGCTTTGGACTAGAAATAGCCCAGGCTCCTCCCAGC
ATCCAGAAAGTCCCAGGCTGCCCAACCCTCTCTGGGACAGAGGAAAAATTGGCAAGGTTGAAGGTCACCA
GCACATTCAGGATTTCTCTCAAAAGTCCCATCTGCCGTCTATTGTGGTGGAATCCAGTGAGGTGAATGAA
GAGAGTGGGGATCTCCATTTGCCCCATGAGGAGCTGCTGCTGCTCACTGATGGTGAGGAAGAGGATGCTG
AGGCCTTCTTCCAAGACCAAAGTGAAGAGCCAGGCTGGGCTTGGAGCCCACAGGACCCTAGAAGTCCTTT
AAGAACATTTAACGCTGGACTCAGCTGGGGGCAGGACCAGGATGAAGAAGATGCTTGTTGGATTCTTGAG
GACACAGCATGTCTGGAAGCCACCAACCACTGTCCCTTCTGGGACTCAACAGGCTCCCGTGTTTGTAGAA
GTGGCTTTGTGGAATATTCCCATCTCCTGCCTCCTAATAGCTTTGAGGGAGCTGAAGAAGAAGCTGTTCA
AACGCCGGCGGGTGTTGAATCGGGAGCGGCGTCTGAGGCACCGGGTGGTCGGGGCTGTGATAGACCAAGG
GCTGATCACGCGGCACCACCTCAAGAAGCGGGCGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAG
AAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCC
CTTCAAAGCCAGCCAGGACTAG

Translation (263 aa):
MALVPGRSKEDGLWTRNSPGSSQHPESPRLPNPLWDRGKIGKVEGHQHIQDFSQKSHLPSIVVESSEVNE
ESGDLHLPHEELLLLTDGEEEDAEAFFQDQSEEPGWAWSPQDPRSPLRTFNAGLSWGQDQDEEDACWILE
DTACLEATNHCPFWDSTGSRVCRSGFVEYSHLLPPNSFEGAEEEAVQTPAGVESGAASEAPGGRGCDRPR
ADHAAPPQEAGVQCTCQHYTVREEAQKTPPADPACPEREDSHGSGSPFKASQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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