NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8004.1 Public Homo sapiens 11 CYB561A3 24 110 108 CCDS HistoryNCBI Gene:220002Re-query CCDS DB by CCDS ID:8004.1Re-query CCDS DB by GeneID:220002See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294072.9 ENSP00000294072.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294072.9Link to Ensembl Protein Viewer:ENSP00000294072.4Re-query CCDS DB by Nucleotide ID:ENST00000294072Re-query CCDS DB by Protein ID:ENSP00000294072
Original member Current member EBI ENST00000536915.5 ENSP00000437390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536915.5Link to Ensembl Protein Viewer:ENSP00000437390.1Re-query CCDS DB by Nucleotide ID:ENST00000536915Re-query CCDS DB by Protein ID:ENSP00000437390
Original member Current member NCBI NM_001161452.2 NP_001154924.1 Accepted alive Link to Nucleotide Sequence:NM_001161452.2Link to Protein Sequence:NP_001154924.1Re-query CCDS DB by Nucleotide ID:NM_001161452Re-query CCDS DB by Protein ID:NP_001154924Link to BLAST:NP_001154924.1
Original member Current member NCBI NM_153611.6 NP_705839.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153611.6Link to Protein Sequence:NP_705839.3Re-query CCDS DB by Nucleotide ID:NM_153611Re-query CCDS DB by Protein ID:NP_705839Link to BLAST:NP_705839.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154924.1 242 Q8NBI2-1 242 100% 0 0
NP_705839.3 242 Q8NBI2-1 242 100% 0 0

Chromosomal Locations for CCDS 8004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61350399 61350422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61350991 61351147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61352985 61353139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61353784 61353992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61356530 61356713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGTGTCTGGACGGTTCTACTTGTCCTGCCTGCTGCTGGGGTCCCTGGGCTCTATGTGCATCCTCTTCA
CTATCTACTGGATGCAGTACTGGCGTGGTGGCTTTGCCTGGAATGGCAGCATCTACATGTTCAACTGGCA
CCCAGTGCTTATGGTTGCTGGCATGGTGGTATTCTATGGAGGTGCGTCACTGGTGTACCGCCTGCCCCAG
TCGTGGGTGGGGCCCAAACTGCCCTGGAAACTCCTCCATGCAGCGCTGCACCTGATGGCCTTCGTCCTCA
CTGTTGTGGGGCTGGTTGCTGTCTTTACGTTTCACAACCATGGAAGGACTGCCAACCTCTACTCCCTTCA
CAGCTGGCTGGGCATCACCACTGTCTTCCTCTTCGCCTGCCAGTGGTTCCTGGGCTTTGCTGTCTTCCTC
CTGCCCTGGGCGTCCATGTGGCTGCGCAGCCTCCTAAAACCTATCCACGTCTTTTTTGGAGCCGCCATCC
TCTCTCTGTCCATCGCATCCGTCATTTCGGGCATTAATGAGAAGCTTTTCTTCAGTTTGAAAAACACCAC
CAGGCCATACCACAGCCTGCCCAGTGAGGCGGTCTTTGCCAACAGCACCGGGATGCTGGTGGTGGCCTTT
GGGCTGCTGGTGCTCTACATCCTTCTGGCTTCATCTTGGAAGCGCCCAGAGCCGGGGATCCTGACCGACA
GACAGCCCCTGCTGCATGATGGGGAGTGA

Translation (242 aa):
MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYRLPQ
SWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFL
LPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAF
GLLVLYILLASSWKRPEPGILTDRQPLLHDGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH