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Report for CCDS79997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79997.1 Public Mus musculus 3 Slc16a4 23 108 98 CCDS HistoryNCBI Gene:229699Re-query CCDS DB by CCDS ID:79997.1Re-query CCDS DB by GeneID:229699See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106723.1 ENSMUSP00000102334.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106723.1Link to Ensembl Protein Viewer:ENSMUSP00000102334.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106723Re-query CCDS DB by Protein ID:ENSMUSP00000102334
Original member NCBI NM_001310705.1 NP_001297634.1 Updated not alive Link to Nucleotide Sequence:NM_001310705.1Link to Protein Sequence:NP_001297634.1Re-query CCDS DB by Nucleotide ID:NM_001310705Re-query CCDS DB by Protein ID:NP_001297634
Current member NCBI NM_001310705.2 NP_001297634.1 Accepted alive Link to Nucleotide Sequence:NM_001310705.2Link to Protein Sequence:NP_001297634.1Re-query CCDS DB by Nucleotide ID:NM_001310705Re-query CCDS DB by Protein ID:NP_001297634Link to BLAST:NP_001297634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297634.1 468 Q8R0M8-2 468 100% 0 0

Chromosomal Locations for CCDS 79997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107292439 107292525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107297945 107298077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107298836 107298979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107299120 107299281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107300702 107301220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107303061 107303272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107304411 107304504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107306042 107306097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGTGAAGAAGGAAAAAACGCCCTCCCCTTACACCAAACCCCTTGATGGAGGATGGGGGTGGATGGTCG
TGCTTCATTTTTTCCTGGTAAATGTGTTTGTGATGGGAATGACCAAGACATTTGCAATTTTCTTTGTGGT
TTTTCAAGAAGAGTTTGAAGGCACTTCAGAGCAAATTGGTTGGATTGGATCCATTATGTCATCACTCCGT
TTCTCTGCAGGTCCCCTGGCTGCTATCATCTGTGACGTACTTGGAGAGAAAGCTACCTCCATTCTTGGGA
CGTTCCTTGTCTCTGGTGGCTATGTCATCAGCAGCTGGGCCACAGGCATTCCCTTTCTTTGTGTGACCAT
GGGGCTGCTACCTGGTTTGGGATCTGCTTTCTTGTACCAAGTAGCTGCTGTGGTAATTACCAAATATTTC
AAAAAACGATTGGGCCTTTCTACAGCAATTGCCCGTTCTGGAATGGGGCTGACATTTTTGTTGGCACCCT
TTACAAAATTCCTCATAGATCTTTATGACTGGACAGGCGCTCTTATTTTATTTGGAGCAATTATATTGAA
CTTGGTGCCTTCCAGCATGCTCTTAAGACCCATCCACAGCCAATCAAACAACAATTCTGACATTGAAAAC
AAAGGTAGCATTTTGTCTGCAACTGAACCAGAGGCATCATACAAGACAGAGACATCGAAGTGCAAGGAGA
CACAGGAGCCTTTCATCAAAGACAGTACTATGAAGAAATCTGAACAACCTACCACAACCTTAACTGTCTT
AGGAAATCAAAGCGAAGAGTTCAGCAATAGGCCTCACAGGAACAGGCCGTTACTTATGAGCAATGGCAAA
AGTCACAAGAAAAAGTTTGTTTCATGGAACTGCAAACAAAAACTTTTAGATATCTCGCTCTTTAGAAACC
CTTTCTTCTACATTTTTACCTGGTCTTTTCTCCTGAGCCAATTAGCATATTTCATTCCCACTTTCCACCT
AGTAGCCAGAGCAAAAACACTTGGGATTGACGTAATGGATGCCTCCTACCTTGTGTCTGTAGCTGGTATC
ACTGAGACAGTCAGTCAGCTCATTTCTGGATGGATTGCTGATCAAAATTGGATCAAGAAGTATCAATACC
ACAAGTCTTACCTCATTCTGTGTGGTGTGACTAACCTGCTTGCTCCTTTAGCCACCACATTCCCACTCCT
TATGGCCTATACCATCCTTTTTGCCATTTTTGCTGGTGGCTACCTGGCACTAATACTGCCAGTATTGGTT
GACCTATCTAAGAATTCTAGAGTACACAAGTTTTTGGGATATGCCAGTTTCTTTGCCGGGATAGCTGTAC
TTTCTGGACCACCAATAGCAGATGTAACTCATGGGTGGACCACTTACCTAATGCACATGAAGCCCTTGAA
AACCTAA

Translation (468 aa):
MVKKEKTPSPYTKPLDGGWGWMVVLHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLR
FSAGPLAAIICDVLGEKATSILGTFLVSGGYVISSWATGIPFLCVTMGLLPGLGSAFLYQVAAVVITKYF
KKRLGLSTAIARSGMGLTFLLAPFTKFLIDLYDWTGALILFGAIILNLVPSSMLLRPIHSQSNNNSDIEN
KGSILSATEPEASYKTETSKCKETQEPFIKDSTMKKSEQPTTTLTVLGNQSEEFSNRPHRNRPLLMSNGK
SHKKKFVSWNCKQKLLDISLFRNPFFYIFTWSFLLSQLAYFIPTFHLVARAKTLGIDVMDASYLVSVAGI
TETVSQLISGWIADQNWIKKYQYHKSYLILCGVTNLLAPLATTFPLLMAYTILFAIFAGGYLALILPVLV
DLSKNSRVHKFLGYASFFAGIAVLSGPPIADVTHGWTTYLMHMKPLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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