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Report for CCDS79975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79975.1 Public Mus musculus 3 Tuft1 23 108 98 CCDS HistoryNCBI Gene:22156Re-query CCDS DB by CCDS ID:79975.1Re-query CCDS DB by GeneID:22156See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196733.4 ENSMUSP00000143278.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196733.4Link to Ensembl Protein Viewer:ENSMUSP00000143278.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196733Re-query CCDS DB by Protein ID:ENSMUSP00000143278
Original member Current member NCBI NM_001293728.1 NP_001280657.1 Accepted alive Link to Nucleotide Sequence:NM_001293728.1Link to Protein Sequence:NP_001280657.1Re-query CCDS DB by Nucleotide ID:NM_001293728Re-query CCDS DB by Protein ID:NP_001280657Link to BLAST:NP_001280657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280657.1 365 O08970-2 365 100% 0 0

Chromosomal Locations for CCDS 79975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94614128 94614191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94614724 94614824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94615770 94615853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94616622 94616727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94622051 94622145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94622688 94622816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94628197 94628310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94632597 94632662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94634458 94634547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94635409 94635495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94638925 94639026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94658725 94658784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGAACGGGACGCGGAACTGGTGTACCTTGGTGGACGTGCACCCGGAGAGCCAGACCGCGGCGGGCAGGA
AGACCTATGCCATGATGCCTGGCCACTCCTCAGGTCATTCTCTGGCTTCAGAACTGGTGGAGTCCCATGA
TGGCCATGAAGAGATCATTAAGGTTTACTTGAAAGGGAGGTCTGGGGACAAGATGACCCATGAGAAGAAC
ATCGACCAGCTGAAGAGTGAGGTCCAGTACATCCAGGAGGCCAGGAACTGCCTGCAGAAGCTCCGGGAGG
ATATAAGTAGCAAGCTTGACAGGAGTCCAGGAGACCCTCTGCGTCAGCAGGAGATACAGGTGGTACTAGA
AAAGCCAAATGGCTTTAGTCAGAGTCCCATGACTCTCTACAGTAGCCCACCTGAGGTGGACCCTAGCATG
AGTGAAGATGTTGAGAGCTTGAAGAAGACTGTGCAGGAGTTGCTTGTCAAGCTGCGGGAGGCTGAGCGGC
GACACCAGTCAGACCGTGTGGCCTTTGAGGTCACACTCAGCCGTTATCAGCGAGAAGCAGAACAGAGTAA
TGTGGCCCTTCAGAGAGAGGAGGACAGAGTGGAGCAGAAAGCGGCAGAAATCGAGGAGCTACAGAGGCGC
TTGCTGGGGATGGAGGCGGAGCATCAGGCCTTACTGGTGAAAGTCAGGGAAGGAGAGATGGCCCTAGAAG
AGCTTCGGATCAAGAACGCTGACTGTCAAACAGAAAGAGAAAAGTCTGCTGCTCTAGAAAAGGAAGTGGC
TGGGTTTCGGGAGAAGATCCACCACTTGGATGACATGCTGAAGAGCCAGCAGCGGAAAGTTCGGCAGATG
ATAGAGCAGCTCCAGAATTCAAAAGCTGTGATCCAGTCAAAGGATGCCACCATTCAAGAGCTCAAGGAGA
AAATTGCCTATCTGGAGGCTGAGAACTTAGAGATGCACGACCGCATGGAGCATCTAATAGAGAAGCAGGT
CAGCCACGGAAACTTCAGCACACAGGCCCGTGCCAAGACAGAGAACCTGGGCAGTGTCAGGATATCGAAG
CCCCCCAGCCCCAAGCCTATGCCTCTCATCCGGGTGGTGGAAACCTGA

Translation (365 aa):
MNGTRNWCTLVDVHPESQTAAGRKTYAMMPGHSSGHSLASELVESHDGHEEIIKVYLKGRSGDKMTHEKN
IDQLKSEVQYIQEARNCLQKLREDISSKLDRSPGDPLRQQEIQVVLEKPNGFSQSPMTLYSSPPEVDPSM
SEDVESLKKTVQELLVKLREAERRHQSDRVAFEVTLSRYQREAEQSNVALQREEDRVEQKAAEIEELQRR
LLGMEAEHQALLVKVREGEMALEELRIKNADCQTEREKSAALEKEVAGFREKIHHLDDMLKSQQRKVRQM
IEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQVSHGNFSTQARAKTENLGSVRISK
PPSPKPMPLIRVVET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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