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Report for CCDS79419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79419.1 Public Mus musculus 16 Rogdi 23 108 98 CCDS HistoryNCBI Gene:66049Re-query CCDS DB by CCDS ID:79419.1Re-query CCDS DB by GeneID:66049See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202281.3 ENSMUSP00000144481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202281.3Link to Ensembl Protein Viewer:ENSMUSP00000144481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202281Re-query CCDS DB by Protein ID:ENSMUSP00000144481
Original member Current member NCBI NM_133185.2 NP_573448.2 Accepted alive Link to Nucleotide Sequence:NM_133185.2Link to Protein Sequence:NP_573448.2Re-query CCDS DB by Nucleotide ID:NM_133185Re-query CCDS DB by Protein ID:NP_573448Link to BLAST:NP_573448.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573448.2 287 Q3TDK6-1 287 100% 0 0

Chromosomal Locations for CCDS 79419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5009211 5009252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5009478 5009604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5009901 5009950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5010040 5010153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5010467 5010565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5010847 5010942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5011612 5011692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5012241 5012295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5012427 5012509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5013303 5013374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5013463 5013507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCGACCGCGATGGCTGCGAGCGCCGCGGAGCGGGCAGTACTGGAGGAGGAGTTTCGCTGGTTACTGC
ACGCTGAGGTGCACGCCGTGCTGAGACAGCTGCAGGACATCCTCAAGGAGGCCTCTCTCCGCTTCACTCT
CCCAGGCCCCAGCACCGAGGGCCCTGCCAAGCAGGAGAACTTCATCCTGGGCAGCTGTGGCACAGACCAG
GTGAAAGGGACTCTGACTCTGCAAGGGGATGCCCTCAGCCAAGCGGATGTGAACCTGAAGATGCCTCGGA
ACAACCAGTTGTTGCACTTGGCCTTCCGGGAAGACAAGCAGTGGAAGCTGCAGCAGATCCAGGATGCCAG
GAACCATGTGAGCCAAGCTATTTATCTCCTAGCAAACCGGGATGAGAGCTACCAGTTCAAGACAGGAGCG
GAGGTCCTCAAGCTCATGGATGCTGTTATGCTGCAACTGACTAGAGCCAGAAGCCGGCTCACTACCCCAG
CCACCCTCACCCTGCCGGAGATTGCTGCCAGCGGCCTCACGCGGATGTTTGCACCTACCCTACCCTCTGA
CCTGCTGGTCAATGTCTACATCAACCTCAACAAGCTGTGCCTCACTGTATACCAGCTGCACGCCCTGCAA
CCCACCTCCACCAAGAACTTCCGCCCGGCCGGAGGCGCAGTGCTCCACAGCCCCGGCGCTATGTTTGAGT
GGGGCTCACAGCGTCTCGAGGTGAGCCACGTGCACAAGGTAGAATGTGTGATACCCTGGCTCAACGATGC
CCTGGTATACTTCACCGTCTCCCTGCAACTCTGCCAGCAGCTCAAGGACAAGATCGCTGTGTTTTCCAGC
TACTGGAGCTCCCGGCCCTTCTGA

Translation (287 aa):
MATAMAASAAERAVLEEEFRWLLHAEVHAVLRQLQDILKEASLRFTLPGPSTEGPAKQENFILGSCGTDQ
VKGTLTLQGDALSQADVNLKMPRNNQLLHLAFREDKQWKLQQIQDARNHVSQAIYLLANRDESYQFKTGA
EVLKLMDAVMLQLTRARSRLTTPATLTLPEIAASGLTRMFAPTLPSDLLVNVYINLNKLCLTVYQLHALQ
PTSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKIAVFSS
YWSSRPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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