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Report for CCDS7940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7940.1 Public Homo sapiens 11 KBTBD4 24 110 108 CCDS HistoryNCBI Gene:55709Re-query CCDS DB by CCDS ID:7940.1Re-query CCDS DB by GeneID:55709See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395288.6 ENSP00000378703.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395288.6Link to Ensembl Protein Viewer:ENSP00000378703.2Re-query CCDS DB by Nucleotide ID:ENST00000395288Re-query CCDS DB by Protein ID:ENSP00000378703
Original member Current member EBI ENST00000526005.5 ENSP00000433340.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526005.5Link to Ensembl Protein Viewer:ENSP00000433340.1Re-query CCDS DB by Nucleotide ID:ENST00000526005Re-query CCDS DB by Protein ID:ENSP00000433340
Original member Current member NCBI NM_001318721.2 NP_001305650.1 Accepted alive Link to Nucleotide Sequence:NM_001318721.2Link to Protein Sequence:NP_001305650.1Re-query CCDS DB by Nucleotide ID:NM_001318721Re-query CCDS DB by Protein ID:NP_001305650Link to BLAST:NP_001305650.1
Original member Current member NCBI NM_001318722.2 NP_001305651.1 Accepted alive Link to Nucleotide Sequence:NM_001318722.2Link to Protein Sequence:NP_001305651.1Re-query CCDS DB by Nucleotide ID:NM_001318722Re-query CCDS DB by Protein ID:NP_001305651Link to BLAST:NP_001305651.1
Original member Current member NCBI NM_001318723.2 NP_001305652.1 Accepted alive Link to Nucleotide Sequence:NM_001318723.2Link to Protein Sequence:NP_001305652.1Re-query CCDS DB by Nucleotide ID:NM_001318723Re-query CCDS DB by Protein ID:NP_001305652Link to BLAST:NP_001305652.1
Original member Current member NCBI NM_001318724.2 NP_001305653.1 Accepted alive Link to Nucleotide Sequence:NM_001318724.2Link to Protein Sequence:NP_001305653.1Re-query CCDS DB by Nucleotide ID:NM_001318724Re-query CCDS DB by Protein ID:NP_001305653Link to BLAST:NP_001305653.1
Original member Current member NCBI NM_001318725.2 NP_001305654.1 Accepted alive Link to Nucleotide Sequence:NM_001318725.2Link to Protein Sequence:NP_001305654.1Re-query CCDS DB by Nucleotide ID:NM_001318725Re-query CCDS DB by Protein ID:NP_001305654Link to BLAST:NP_001305654.1
Original member Current member NCBI NM_016506.7 NP_057590.3 Accepted alive Link to Nucleotide Sequence:NM_016506.7Link to Protein Sequence:NP_057590.3Re-query CCDS DB by Nucleotide ID:NM_016506Re-query CCDS DB by Protein ID:NP_057590Link to BLAST:NP_057590.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305650.1 518 Q9NVX7-1 518 100% 0 0
NP_001305651.1 518 Q9NVX7-1 518 100% 0 0
NP_001305652.1 518 Q9NVX7-1 518 100% 0 0
NP_001305653.1 518 Q9NVX7-1 518 100% 0 0
NP_001305654.1 518 Q9NVX7-1 518 100% 0 0
NP_057590.3 518 Q9NVX7-1 518 100% 0 0

Chromosomal Locations for CCDS 7940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47572930 47573790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47575593 47575699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47577411 47577999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGAATCACCAGAGGAGCCTGGAGCATCCATGGATGAGAACTACTTTGTGAACTACACTTTCAAAGATC
GGTCACATTCAGGCCGTGTGGCTCAAGGCATCATGAAACTGTGTCTAGAGGAGGAGCTCTTTGCTGATGT
CACCATTTCGGTGGAAGGCCGGGAGTTTCAGCTCCATCGGCTGGTCCTCTCAGCTCAGAGCTGCTTCTTC
CGATCCATGTTCACTTCCAACCTGAAGGAGGCCCACAACCGGGTGATTGTGCTGCAGGATGTCAGCGAGT
CTGTTTTCCAGCTCCTGGTTGATTATATCTACCATGGGACTGTGAAACTTCGAGCTGAGGAGTTGCAGGA
AATTTATGAGGTGTCAGACATGTATCAGCTGACATCTCTCTTTGAGGAATGCTCTCGGTTTTTGGCCCGC
ACAGTGCAAGTGGGAAACTGCCTTCAGGTGATGTGGCTGGCAGATCGGCACAGTGATCCTGAGCTCTATA
CGGCTGCCAAGCACTGTGCCAAGACCCACCTGGCCCAGCTGCAGAATACAGAGGAATTTCTCCACTTGCC
CCACCGCTTACTCACAGATATCATCTCGGATGGAGTTCCGTGTTCTCAGAACCCAACAGAGGCAATAGAA
GCCTGGATCAACTTTAATAAAGAGGAAAGAGAGGCTTTTGCAGAGTCACTCAGGACAAGCTTGAAGGAAA
TTGGGGAGAATGTGCACATTTACCTGATTGGGAAAGAGTCATCTCGTACCCACTCGTTGGCTGTGTCCTT
GCACTGTGCAGAAGATGACTCCATCAGTGTAAGTGGCCAAAACAGTTTGTGCCACCAGATCACTGCGGCC
TGCAAGCATGGTGGAGACTTGTATGTGGTGGGAGGGTCCATCCCACGGCGCATGTGGAAGTGCAACAATG
CCACCGTTGACTGGGAGTGGTGTGCTCCTTTGCCTCGGGACCGGCTCCAGCACACCCTGGTGTCTGTGCC
CGGGAAAGATGCCATATATTCACTGGGTGGCAAGACACTGCAAGATACCCTCTCCAACGCAGTCATTTAT
TATCGCGTAGGTGATAATGTGTGGACAGAGACAACTCAGCTAGAGGTGGCTGTGTCAGGGGCTGCTGGTG
CCAACCTCAACGGGATCATCTACTTACTAGGGGGGGAGGAGAATGATCTGGACTTCTTTACCAAACCTTC
CCGACTCATCCAGTGCTTTGACACAGAGACAGACAAATGCCATGTGAAGCCCTATGTGCTGCCCTTTGCA
GGCCGCATGCACGCAGCTGTGCATAAAGATCTGGTGTTCATCGTGGCTGAAGGGGACTCCCTGGTGTGCT
ACAATCCCTTGCTAGACAGCTTCACCCGGCTTTGCCTTCCTGAGGCCTGGAGCTCTGCCCCATCCCTCTG
GAAGATTGCCAGCTGTAACGGGAGCATCTATGTCTTCCGGGACCGATATAAAAAGGGGGATGCCAACACC
TACAAGCTTGACCCTGCCACTTCAGCCGTAACTGTCACAAGAGGTATTAAGGTGCTGCTTACCAATTTGC
AGTTTGTGTTGGCCTAA

Translation (518 aa):
MESPEEPGASMDENYFVNYTFKDRSHSGRVAQGIMKLCLEEELFADVTISVEGREFQLHRLVLSAQSCFF
RSMFTSNLKEAHNRVIVLQDVSESVFQLLVDYIYHGTVKLRAEELQEIYEVSDMYQLTSLFEECSRFLAR
TVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDGVPCSQNPTEAIE
AWINFNKEEREAFAESLRTSLKEIGENVHIYLIGKESSRTHSLAVSLHCAEDDSISVSGQNSLCHQITAA
CKHGGDLYVVGGSIPRRMWKCNNATVDWEWCAPLPRDRLQHTLVSVPGKDAIYSLGGKTLQDTLSNAVIY
YRVGDNVWTETTQLEVAVSGAAGANLNGIIYLLGGEENDLDFFTKPSRLIQCFDTETDKCHVKPYVLPFA
GRMHAAVHKDLVFIVAEGDSLVCYNPLLDSFTRLCLPEAWSSAPSLWKIASCNGSIYVFRDRYKKGDANT
YKLDPATSAVTVTRGIKVLLTNLQFVLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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