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Report for CCDS79328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79328.1 Public Mus musculus 14 Spata13 23 108 98 CCDS HistoryNCBI Gene:219140Re-query CCDS DB by CCDS ID:79328.1Re-query CCDS DB by GeneID:219140See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162945.1 ENSMUSP00000123888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162945.1Link to Ensembl Protein Viewer:ENSMUSP00000123888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162945Re-query CCDS DB by Protein ID:ENSMUSP00000123888
Original member NCBI NM_001310594.1 NP_001297523.1 Updated not alive Link to Nucleotide Sequence:NM_001310594.1Link to Protein Sequence:NP_001297523.1Re-query CCDS DB by Nucleotide ID:NM_001310594Re-query CCDS DB by Protein ID:NP_001297523
Current member NCBI NM_001310594.2 NP_001297523.1 Accepted alive Link to Nucleotide Sequence:NM_001310594.2Link to Protein Sequence:NP_001297523.1Re-query CCDS DB by Nucleotide ID:NM_001310594Re-query CCDS DB by Protein ID:NP_001297523Link to BLAST:NP_001297523.1

Chromosomal Locations for CCDS 79328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60733152 60733206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60745645 60745781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60746714 60746893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60747441 60747626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60749963 60750142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60751635 60751867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60753781 60753910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60756212 60756584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60759583 60759657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60760876 60761051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGTAGCTAGAGGAGAAATAGCAAGATTTTGGAGTCTGGAAAGCCTTCACATGGTCTCTTCAGATGGAG
GTGCGGAGTCTTCGGCCTTAGTGGATGATAATGGTAGTGAGGAAGACTTCAGCTATGAGGAGCTCTGCCA
GGCCAACCCTCGGTACCTGCAGCCAGGAGGGGAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGC
GTGGTCTGTGCAGAAGCACTGTGGGACCATGTGACCATGGACGACCAGGAGCTGGGCTTCAAGGCTGGGG
ATGTCATCCAAGTTCTGGAAGCTTCTAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTG
GTTCCCTGCAAGCTTTGTTAGGCTTCGAGTCAATCAGGAGGAGCTGCCCGAGAACTGCAGCAGCTCCCAT
GGGGAAGAGCAGGATGAGGACACCAGCAAAGCCCGCCACAAGCACCCAGAGAGCCAGCAGCAGATGCGGA
CCAACGTCATCCAGGAGATAATGAACACCGAGCGAGTGTATATCAAGCACCTGAAGGACATCTGCGAGGG
CTATATCCGACAGTGTCGTAAGCACACGGGAATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAAC
ATTGAAGACATTTACAAATTCCAAAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAAC
CTCACTTGAGTGAAATAGGATCCTGCTTTCTTGAGCACCAAGAGGGCTTCGCCATCTACTCTGAGTACTG
CAACAACCACCCAGGCGCCTGTGTGGAGCTGTCCAACCTCATGAAACACAGCAAGTACCGGCACTTCTTC
GAGGCCTGCCGCCTGCTCCAGCAGATGATCGACATCGCCCTGGACGGCTTCCTCCTCACGCCTGTGCAGA
AGATCTGCAAATACCCGCTGCAGCTGGCTGAGCTGCTCAAGTACACCACACAGGAGCACGGCGATTACAA
CAATATAAAGGCAGCCTATGAAGCCATGAAGAACGTGGCCTGCTTGATCAATGAACGCAAGCGCAAGCTG
GAGAGCATCGACAAGATCGCCCGCTGGCAGGTGTCCATCGTAGGCTGGGAGGGCCTGGACATTCTAGACC
GAAGCTCTGAGTTGATTCATTCCGGAGAGCTGACCAAAATCACCAGGCAGGGCAAGAGCCAGCAACGCAT
CTTCTTCCTTTTCGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTATACTAC
AAGGGCCGCATGGACATGGACGAGGTAGAGCTTGTGGACGTGGAGGATGGGCGGGACAAAGACTGGAGCC
TCAGCCTGCGGAATGCCTTCAAGCTGGTCAGCAAAGCCACGGACGAGGTCCATCTGTTCTGCGCCAGAAA
GCAAGAAGACAAGGCCAGGTGGCTGCAGGCCTATGCGGACGAGAGGCGGCGGGTGCAGGAGGACCAGCAG
ATGGGTATGGAAATCCCAGAAAATCAGAAGAAACTCGCCATGTTGAACGCTCAGAAGGCAGGACATGGGA
AATCTAAAGGCTACAACAGCTGTCCCGTGGCCCCACCCCACCAGAGCCTGCCGCCCCTTCACCAGCGCCA
CATCACTGTGCCCACCAGCATCCCGCAGCAGCAGGTCTTTGCCTTGGCTGAGCCCAAGAGGAAGCCATCG
ATATTCTGGCACACTTTCCACAAACTCACCCCCTTCCGGAAATGA

Translation (574 aa):
MVARGEIARFWSLESLHMVSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGS
VVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPENCSSSH
GEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVAQLATIFGN
IEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLEHQEGFAIYSEYCNNHPGACVELSNLMKHSKYRHFF
EACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYNNIKAAYEAMKNVACLINERKRKL
ESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYY
KGRMDMDEVELVDVEDGRDKDWSLSLRNAFKLVSKATDEVHLFCARKQEDKARWLQAYADERRRVQEDQQ
MGMEIPENQKKLAMLNAQKAGHGKSKGYNSCPVAPPHQSLPPLHQRHITVPTSIPQQQVFALAEPKRKPS
IFWHTFHKLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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