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Report for CCDS78964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78964.1 Public Mus musculus 11 Specc1 23 108 98 CCDS HistoryNCBI Gene:432572Re-query CCDS DB by CCDS ID:78964.1Re-query CCDS DB by GeneID:432572See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 78964.1
This coding region lacks full-length transcript support. Therefore, this CCDS representation has an inferred exon combination based on partial transcript and RNA-seq alignments.

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 78964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202178.3 ENSMUSP00000144161.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202178.3Link to Ensembl Protein Viewer:ENSMUSP00000144161.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202178Re-query CCDS DB by Protein ID:ENSMUSP00000144161
Original member Current member NCBI NM_001310526.1 NP_001297455.1 Accepted alive Link to Nucleotide Sequence:NM_001310526.1Link to Protein Sequence:NP_001297455.1Re-query CCDS DB by Nucleotide ID:NM_001310526Re-query CCDS DB by Protein ID:NP_001297455Link to BLAST:NP_001297455.1

Chromosomal Locations for CCDS 78964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62029276 62029422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62042943 62043075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62117700 62119282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62128200 62128407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62131830 62131903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62132276 62132454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62138050 62138071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2346 nt):
ATGCGGAGTGCCGCCAAGCCCTGGAGTCCAGTCGCCAAAGCAGGCAGCCATGGTCCTGATCGCACTCGGC
CCCTCCCTGGCACTCCTTCTGGCATGAAGAGTTCCAAGTCTTCAACCTCACTGGCTTTCGAGTCTCGGCT
GAGTAAGCTCAAGAGGGCCAGCAGCGAGGACACACTCAACAAACCTGGAAGTGCCTCTTCAGGGGTGGCG
AGACTGAAGAAGACCTCAACCTCCGGAGCCATCTCTGAGCTCACTGAGAGCCGCCTGAGGAGCAACACAG
GGACTATTCCAACAACTAAACGGACAGGCATTCCAGCTCCACGGGAGCTCTCAGTAACTATCTCCAGAGA
GAGGTCTGTGCCACGTGGTCCCTCCAGCTCAAAGAAGTTAGGCTCCAGCCCAACTTCTTCCTGCAATCCC
ACTCCTACCAAGCATCTGAGGACCACCCCTGCAAAACCTAAGCAAGAGCATGAAGGTGCAGAGAAGGCTG
TGCTCGAGTCCCAGGTACGAGAACTTCTGGCAGAAGCCAAAACCAAAGACAGTGAAATCAACAGGCTTCG
AAGTGAACTAAAAAAATGCAAAGAGAGGTGGGCCCTGAGCACTGAGGATGCCAATGCTTCAGACCCAAGT
GCAGAGGGAACAGCATCCCCAGAAAGTGATGCACAGCCTTTGATAAGAACCCTGGAGGAGAAGAACAAGA
CCTTTCAGAAAGAGCTTGCTGACCTAGAGGAAGAAAACAGGGCCTTGAAGGAGAAACTGACTTACCTTGA
GCAGTCACCAAATTCAGAAGGGGCAGCAAGTCACACTGGTGACAGCAGCTGCCCAACATCTATAACCCAC
GAGTCCAGTTTTGGAAGCCCAGTTGGAAATGAGTTGTCTAGTGAAACAGATGAGTACAGAAGAACCACAC
ATGGGAGTGCCTTGCGGACATCAGGGTCTTCAAGCAGTGATGTCACCAAAGCCTCTCTGTCACCGGACGC
CTCAGATTTTGAGCATATCACTGCAGACACCCCGTCTCGGCCCCTGTCAGCCACTAGCAACCCTTTTAAG
AGCTCCAAGGGCTCCCCTACTGGGAGCTCCCCAAACAATGCAAGTGAGCTGTCCTTGGCATCTCTCACGG
AGAAGATACAGAAGATGGAGGAGAATCAGCACAGCACTGCAGAAGAGCTGCAGGCTACTCTGCAGGAATT
ATCAGACCAGCAGCAGATGGTGCAGGAACTGACAGCCGAGAACGAGAAGCTAGTGGATGAGAAGACCATT
CTGGAGACCTCCTTCCACCAGCACCGAGAGAGGGCAGAACAGCTGAGTCAGGAAAATGAGAAGCTGATCA
ACCTTTTACAGGAGCGAGTGAAGAATGAGGAACCCAGTGCCCAGGGAGGGAAGGTCCTTGAGCTGGAGCA
GAAGTGCACGGATATTCTCGAGAAGAGCCGCTTTGAAAGAGAGAAGCTGCTCAACATTCAGCAGCAGCTG
ACCTGTAGCCTACGGAAGGTTGAGGAAGAAAACCAAGGCGCTATAGACATGATTAAGCACCTGAAGGAAG
AAAATGAGAAGCTGAATGGGTTCCTAGAACATGAGCGGTGTAATAATAGTGTGATGGCCAAAACTCTGGA
GGAATGTCGAGTTACCTTGGAAGGCTTGAAAATGGAGAATGGGTCCTTGAAGGCTCTTTTGGAGGCTGAT
AAGCAAAAAGCCATAGAGGCCAGCAGTACTGTGGGGCAGACAGCAGAGAACTTCGAGGTTCAGGAGATGC
TGAAAGTGGCTCGAGCTGAGAAAGATCAGTTGCAGCTGTCTTGCACAGAGCTCAGACAAGAATTGCTAAA
GGCAAATGGTGAAATTAAACATGTTTCCAGCCTGCTAGCTAAGATGGAGAAAGATTATTCGTACCTGAAA
GAAGTCTGTGATCATCAAGCAGAACAGCTGAGCAGAACCAGCCTAAAATTACAAGAGAAAGCTTCAGAAA
GTGACGCAGAAATCAAAGACATGAAAGAGACCATATTTGAATTGGAAGACCAGGTGGAGCAGCATCGCGC
CGTCAAGTTACACAATAACCAGCTCATCAGTGAGCTGGAAGGCAGTGTGATCAAGCTGGAGGAGCAGAAG
TCAGACCTAGAGCGGCAGTTAAAGACGCTAACAAAACAGATAAAGGAGGAAACAGAAGAATGGAGGCGAT
TCCAGGCAGACTTACAGACTGCAGTGGTAGTGGCCAACGACATCAAGTGTGAGGCTCAGCAGGAGCTGCG
CACTGTGAAGAGGAGGTTGCTGGAGGAGGAAGAGAAAAATGCCAGGCTGCAGAAGGAGCTGGGAGACATA
CAGGGGCACAGCAGCTCCATGGTCTCTGTCAGCTAG

Translation (781 aa):
MRSAAKPWSPVAKAGSHGPDRTRPLPGTPSGMKSSKSSTSLAFESRLSKLKRASSEDTLNKPGSASSGVA
RLKKTSTSGAISELTESRLRSNTGTIPTTKRTGIPAPRELSVTISRERSVPRGPSSSKKLGSSPTSSCNP
TPTKHLRTTPAKPKQEHEGAEKAVLESQVRELLAEAKTKDSEINRLRSELKKCKERWALSTEDANASDPS
AEGTASPESDAQPLIRTLEEKNKTFQKELADLEEENRALKEKLTYLEQSPNSEGAASHTGDSSCPTSITH
ESSFGSPVGNELSSETDEYRRTTHGSALRTSGSSSSDVTKASLSPDASDFEHITADTPSRPLSATSNPFK
SSKGSPTGSSPNNASELSLASLTEKIQKMEENQHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTI
LETSFHQHRERAEQLSQENEKLINLLQERVKNEEPSAQGGKVLELEQKCTDILEKSRFEREKLLNIQQQL
TCSLRKVEEENQGAIDMIKHLKEENEKLNGFLEHERCNNSVMAKTLEECRVTLEGLKMENGSLKALLEAD
KQKAIEASSTVGQTAENFEVQEMLKVARAEKDQLQLSCTELRQELLKANGEIKHVSSLLAKMEKDYSYLK
EVCDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELEGSVIKLEEQK
SDLERQLKTLTKQIKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRRLLEEEEKNARLQKELGDI
QGHSSSMVSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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