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Report for CCDS7875.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7875.2 Public Homo sapiens 11 ELP4 24 110 108 CCDS HistoryNCBI Gene:26610Re-query CCDS DB by CCDS ID:7875.2Re-query CCDS DB by GeneID:26610See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7875.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000640961.2 ENSP00000492152.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000640961.2Link to Ensembl Protein Viewer:ENSP00000492152.1Re-query CCDS DB by Nucleotide ID:ENST00000640961Re-query CCDS DB by Protein ID:ENSP00000492152
Original member Current member NCBI NM_019040.5 NP_061913.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019040.5Link to Protein Sequence:NP_061913.3Re-query CCDS DB by Nucleotide ID:NM_019040Re-query CCDS DB by Protein ID:NP_061913Link to BLAST:NP_061913.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061913.3 424 Q96EB1-1 424 100% 0 0

Chromosomal Locations for CCDS 7875.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31509785 31510007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31520056 31520091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31539662 31539783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31594770 31594901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31603768 31603907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31627110 31627194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31632217 31632405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31647741 31647849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31650115 31650221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31783393 31783524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCGGCAGTGGCAACCTGCGGTAGTGTTGCCGCGAGTACTGGGTCTGCAGTGGCGACAGCCAGCAAGA
GCAACGTCACCAGTTTCCAGAGGAGGGGTCCTAGAGCCAGCGTGACCAACGACAGCGGCCCTCGACTGGT
GTCCATTGCGGGCACGCGACCGTCGGTGCGGAATGGACAGCTGCTGGTATCAACCGGGCTCCCAGCCCTA
GACCAGCTCTTAGGTGGAGGTTTAGCCGTTGGAACAGTTCTTCTAATTGAGGAGGATAAATATAATATTT
ACTCACCTTTGCTCTTCAAGTATTTCCTGGCAGAAGGAATTGTCAATGGGCATACTTTGTTGGTTGCATC
TGCTAAAGAGGATCCTGCCAACATTTTACAGGAACTTCCAGCACCATTACTTGATGATAAATGTAAAAAG
GAATTTGATGAAGATGTATACAATCATAAAACACCAGAATCTAATATTAAGATGAAAATAGCTTGGCGTT
ACCAGTTATTACCCAAGATGGAGATTGGACCAGTATCATCTTCAAGATTTGGTCACTATTATGATGCATC
AAAAAGAATGCCACAAGAACTAATTGAGGCTTCAAATTGGCATGGATTTTTTCTTCCAGAGAAAATATCT
TCAACTCTCAAAGTAGAACCCTGTTCTTTGACCCCTGGCTACACAAAGCTGCTTCAGTTTATCCAGAACA
TCATTTATGAGGAAGGATTTGATGGATCCAATCCTCAGAAAAAACAGAGAAACATTTTAAGAATAGGAAT
TCAGAATCTTGGCTCACCTTTATGGGGAGACGATATTTGCTGTGCAGAAAATGGTGGCAACAGTCACAGC
CTTACCAAGTTCCTCTATGTTCTCCGTGGTCTTCTGAGAACCTCTCTTTCAGCCTGCATCATCACAATGC
CAACACATCTGATCCAGAATAAAGCCATTATTGCCCGTGTCACAACCTTGTCAGATGTAGTAGTTGGTCT
GGAATCATTTATTGGTTCTGAGAGAGAAACTAACCCATTGTATAAGGATTATCATGGATTGATTCATATA
CGGCAGATTCCTCGGCTTAATAACTTGATCTGTGATGAATCAGATGTCAAAGACTTAGCTTTTAAATTAA
AAAGGAAGCTATTCACCATTGAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGAGCCGCTCAAG
CAAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGGCCCAGGCTGTGGCATGATGGCCGGAGGCAAGAAG
CACCTGGACTTCTAG

Translation (424 aa):
MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPAL
DQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAPLLDDKCKK
EFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKIS
STLKVEPCSLTPGYTKLLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHS
LTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHI
RQIPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
HLDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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