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Report for CCDS78668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78668.1 Public Mus musculus 1 Sctr 23 108 98 CCDS HistoryNCBI Gene:319229Re-query CCDS DB by CCDS ID:78668.1Re-query CCDS DB by GeneID:319229See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189037.1 ENSMUSP00000139932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189037.1Link to Ensembl Protein Viewer:ENSMUSP00000139932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189037Re-query CCDS DB by Protein ID:ENSMUSP00000139932
Original member Current member NCBI NM_001311077.1 NP_001298006.1 Accepted alive Link to Nucleotide Sequence:NM_001311077.1Link to Protein Sequence:NP_001298006.1Re-query CCDS DB by Nucleotide ID:NM_001311077Re-query CCDS DB by Protein ID:NP_001298006Link to BLAST:NP_001298006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298006.1 447 Q5FWI2 447 100% 0 0

Chromosomal Locations for CCDS 78668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 120007257 120007331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120022158 120022272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120031564 120031671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120036335 120036438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120043451 120043548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120044631 120044763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120046659 120046812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120053674 120053734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120054272 120054341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120055385 120055476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120056394 120056520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120061894 120061935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120063118 120063282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCTCAGCACCATGAGCCCCCGGCTGTCACTGCTTCTGCTGTGGCTGCTGCTGCTCATCAATGCAGCGC
ACCCTGTTGGAGCTCTGCCCAGATTGTGTGATGTGCGGCGTGTGCTGCTCGAGGAACGGGCCGAGTGCCT
GCGGGAACTCTCCGAAGAGAAGAAGGCGCTGGGCCCGAAGACAGCATCAGGCTGTGAGAGGTTTTGGGAC
AACATGAGCTGCTGGCCCTCCTCGGCACTGGCACAGACAGTGGAAGTGCCATGTCCGAAGTTCCTGAGGA
TGTTCTCTGGCAGAAATGGGTCTCTGTTCCGGAACTGCACAAAGGATGGCTGGTCAGAAACCTTCCCCAG
GCCTGACCTGGCCTGTGGGGTCAACATGAATGGCTCCTTTAATGAGAGACGGCATGCATACCTGCTGAAG
CTCAAGGTCATGTACACTGTAGGCTACAGTTCCTCCTTGGCCATGCTCCTGGTCGCCCTCAGCATCCTGT
GCTCTTTCCGGAGGCTGCACTGCACTCGCAACTACATCCACATGCACCTGTTTGTGTCCTTCATCCTTCG
CGCCCTGTCCAACTTCATCAAGGACGCCGTACTCTTCCCCGCAGATGACGTCACCTACTGTGATGCCCAC
AGGGCAGGCTGCAAGCTGGTCATGATCTTCTTCCAGTACTGCATCATGGCCAACTACGCGTGGCTGCTGG
TGGAGGGCCTCTATCTTCACACGCTCCTGGCCATCTCCTTCTTCTCAGAAAGGAAGTGCCTGCAGGCATT
TGTGCTCTTCGGATGGGGTTCTCCAGCCATTTTTGTTGCTTTGTGGGCTGTCACCAGACACTTTCTGGAG
GACTTTGGATGCTGGGACATCAACTCCAACGCTTCCATCTGGTGGGTCATTCGAGGGCCTGTGATTCTGT
CCATCGTGATCAATTTCATCTTTTTCATAAACATTCTAAGAATCCTGATGAGAAAACTTAGAACTCAAGA
AACAAGAGGAAATGAAACACACCATTATAAGCGCCTGGCCAAGTCCACCCTCCTGCTGATCCCTCTCTTT
GGCATCCACTACATTGTCTTCGCCTTCTCCCCAGAGGGTGCCATGGAGGTCCAGCTGTTCTTTGAATTGG
CCCTGGGCTCCTTCCAGGGGCTGGTGGTAGCTGTCCTTTACTGCTTCCTCAATGGTGAGCTGGAAGTTCA
GAAAAAATGGCGCCAGTGGCACCTCCAAGAGTTCCCGCTGCGCCCTGTGGCCCTCAGCAACTCCTTCAGC
AACGCCACCAACGGCCCCACCCACAGCACCAAGGCTGGCACCTCTGAGCAGAGCCGGAGCATCCCCGGGG
CCAATGTCATCTGA

Translation (447 aa):
MLSTMSPRLSLLLLWLLLLINAAHPVGALPRLCDVRRVLLEERAECLRELSEEKKALGPKTASGCERFWD
NMSCWPSSALAQTVEVPCPKFLRMFSGRNGSLFRNCTKDGWSETFPRPDLACGVNMNGSFNERRHAYLLK
LKVMYTVGYSSSLAMLLVALSILCSFRRLHCTRNYIHMHLFVSFILRALSNFIKDAVLFPADDVTYCDAH
RAGCKLVMIFFQYCIMANYAWLLVEGLYLHTLLAISFFSERKCLQAFVLFGWGSPAIFVALWAVTRHFLE
DFGCWDINSNASIWWVIRGPVILSIVINFIFFINILRILMRKLRTQETRGNETHHYKRLAKSTLLLIPLF
GIHYIVFAFSPEGAMEVQLFFELALGSFQGLVVAVLYCFLNGELEVQKKWRQWHLQEFPLRPVALSNSFS
NATNGPTHSTKAGTSEQSRSIPGANVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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