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Report for CCDS78620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78620.1 Public Mus musculus 1 Rnf25 23 108 98 CCDS HistoryNCBI Gene:57751Re-query CCDS DB by CCDS ID:78620.1Re-query CCDS DB by GeneID:57751See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113721.7 ENSMUSP00000109350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113721.7Link to Ensembl Protein Viewer:ENSMUSP00000109350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113721Re-query CCDS DB by Protein ID:ENSMUSP00000109350
Original member Current member NCBI NM_001305230.1 NP_001292159.1 Accepted alive Link to Nucleotide Sequence:NM_001305230.1Link to Protein Sequence:NP_001292159.1Re-query CCDS DB by Nucleotide ID:NM_001305230Re-query CCDS DB by Protein ID:NP_001292159Link to BLAST:NP_001292159.1

Chromosomal Locations for CCDS 78620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74593824 74594402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74594560 74594694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74595209 74595298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74595631 74595768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74595866 74595937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74598362 74598431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74598530 74598597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74598693 74598792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74599066 74599140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74601325 74601365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCGGCGTCTGCGTCGACAGCTGCTGGGGAAGAGGACTGGGTCCTTCCCTCTGAAGTTGAAGTATTAG
AGTCTATCTATCTGGATGAGCTACAGGTGATGAAAGGGAATGGCAGATCACCATGGGAGATCTTTATCAC
TCTGCACCCTGCCACCGCAGAGGTCCAAGATTCGCAGTTTGTCTGCTTTACTCTGGTTCTTCGGATCCCA
GTCCAGTATCCCCACGAGGTTCCACAGATCTCCATCCGTAACCCTCGAGGACTTTCAGATGAGCAGATCC
ACAAGATCTCACAGGCCCTGGGCCATGTGGCCAAGGAAGGACTAGGCACTGCCATGCTCTATGAACTCAT
TGAGAAAGGGAAGGAGATTCTCACGGATAACAACATTCCCCATGGCCAGTGTGTCATCTGCCTCTATGGT
TTCCAGGAGAAGGAGGCCTTTACCAAAACACCCTGTTACCACTACTTCCACTGCCATTGCCTTGCCAGGT
ACATCCAGCACATGGAACAAGAGCTGACTACACAGGAACAGGAACAGGAGCGACAGCACGTTGTCACCAA
GCAGGCAGTCGGTGTGCAGTGTCCTGTGTGCAGGGAGCCCCTTGTGTATGATCTTGCCTCGCTGAAAGCA
GCCCCTGAACCCCAACAACCCATGGAGCTGTACCAACCCAGTGCAGAGAGCTTGCGCCAACAGGAAGAGC
TCAAACTGCTGTATCAGAGGCAGCAGGAAAAGGGTGGTATCATTGACCTTGAGGCTGAACGGAACCGATA
CTTCATTAGCCTTCAGCAGCCTCCTGCTGCTCTTGAGCCGGAGTCAGCTGTAGATGTCTCCAGAGAACCC
CAGCCACCTAATGCCCTTTCTGCAGAACAATCTACTTCCCTAGCTGACCAATCAACTCTGCCAACTTCTC
TACCCATGACAACCCAGTATACGTATGAGAAGACTTCGGGGGCTGGGCCAAATCAACAGAGGCCGGGTGA
GACCCAGAAATCCGTGCTAGATCCTCCACGACATGGTCGTGGCTCCTGGCGACAGTATGATCGGAGGCAC
CCAAAAGGAGGGGAGTGCTGCACCCCAAAAGGTACCAGTGAAATCCATGAACTGCCACCTCCTGAGAAGC
CTCTCAAGGAGACTGTAGACTTAAAGGCAGAACCCCGTAACAAAGGGCTCACAGGTCATCCTCAGGAGAA
GGGGCCTGGTAGCTGGCAGGGCCCCTCAGCTCGCAGGACTCGGGACTGTGCTCGCTGGGAACGCTCCAAA
AACCGTACACCGGGTTCTTGCTATCCCCACCTACCTCGGGGCCAGGGAGCATACCGGTCTGGTACTCGCA
GGGAGCCCCTGGGCTTGGAATCTGAGGAAGGTTCCTAG

Translation (455 aa):
MAASASTAAGEEDWVLPSEVEVLESIYLDELQVMKGNGRSPWEIFITLHPATAEVQDSQFVCFTLVLRIP
VQYPHEVPQISIRNPRGLSDEQIHKISQALGHVAKEGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYG
FQEKEAFTKTPCYHYFHCHCLARYIQHMEQELTTQEQEQERQHVVTKQAVGVQCPVCREPLVYDLASLKA
APEPQQPMELYQPSAESLRQQEELKLLYQRQQEKGGIIDLEAERNRYFISLQQPPAALEPESAVDVSREP
QPPNALSAEQSTSLADQSTLPTSLPMTTQYTYEKTSGAGPNQQRPGETQKSVLDPPRHGRGSWRQYDRRH
PKGGECCTPKGTSEIHELPPPEKPLKETVDLKAEPRNKGLTGHPQEKGPGSWQGPSARRTRDCARWERSK
NRTPGSCYPHLPRGQGAYRSGTRREPLGLESEEGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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