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Report for CCDS78547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78547.1 Public Mus musculus 1 Terf1 23 108 98 CCDS HistoryNCBI Gene:21749Re-query CCDS DB by CCDS ID:78547.1Re-query CCDS DB by GeneID:21749See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027057.7 ENSMUSP00000027057.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027057.7Link to Ensembl Protein Viewer:ENSMUSP00000027057.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027057Re-query CCDS DB by Protein ID:ENSMUSP00000027057
Original member NCBI NM_001286628.1 NP_001273557.1 Updated not alive Link to Nucleotide Sequence:NM_001286628.1Link to Protein Sequence:NP_001273557.1Re-query CCDS DB by Nucleotide ID:NM_001286628Re-query CCDS DB by Protein ID:NP_001273557
Current member NCBI NM_001286628.2 NP_001273557.1 Accepted alive Link to Nucleotide Sequence:NM_001286628.2Link to Protein Sequence:NP_001273557.1Re-query CCDS DB by Nucleotide ID:NM_001286628Re-query CCDS DB by Protein ID:NP_001273557Link to BLAST:NP_001273557.1

Chromosomal Locations for CCDS 78547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15805678 15805957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15807641 15807736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15813041 15813162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15818934 15819083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15819651 15819763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15831507 15831566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15833401 15833489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15838182 15838288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15842921 15843082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCGGAGACGGTCTCCTCAGCGGCCCGGGACGCGCCGAGCCGTGAGGGCTGGACAGATTCGGATTCTC
CAGAGCAGGAGGAGGTGGGAGACGACGCGGAGCTGCTCCAGTGCCAGCTTCAGCTGGGGACCCCGAGAGA
GATGGAGAACGCGGAGCTTGTGGCTGAGGTGGAGGCCGTGGCTGCGGGCTGGATGCTCGACTTCCTCTGC
CTGTCTCTGTGCCGAGCCTTCCGTGACGGCCGCTCCGAGGACTTTCGTCGTACTCGTGACAGCGCCGAGG
CTATTATTCATGGACTACACAGACTTACAGCTTACCAATTGAAAACTGTGTATATATGTCAGTTTTTGAC
AAGAGTTGCATCTGGAAAGGCCCTTGATGCACAGTTTGAAGTTGATGAGCGTATTACACCCTTGGAATCA
GCCCTGATGATTTGGAACTCAATTGAAAAGGAACATGACAAACTGCATGACGAAATAAAGAATTTAATTA
AAATTCAGCCTTTAGAAAGGAAGTTACTTAAGATAATCTCTCAGAAGGATGTGTTCCACTCCCTTTTCCA
ACACTTCAGCTATAGCTGCATGATGGAGAAAATTCAGAGTTATGTGGGTGATGTGTTAAGTGAAAAATCA
TCAACTTTTCTAATGAAGGCAGCAACAAAAGTAGTGGAAAATGAGAAAGCGAGGACACAAGCGTCTAAGG
ATAGGCCAGATGCCACCAACACTGGAATGGACACTGAAGTTGGTTTGAATAAAGAGAAAAGTGTTAATGG
CCAGCAGTCTACAGAAACTGAACCCTTAGTGGATACAGTATCCTCAATAAGGTCTCACAAGAACGCCTTA
TCGCAGTTAAAACACAGACGTGCTCCATCAGATTTCAGTAGGAACGAAGCAAGAACAGGAACTCTTCAGT
GTGAAACAACGATGGAAAGGAACCGAAGAACCAGTGGAAGGAATAGATTGTGTGTCTCAGAGAATCAGCC
AGACACTGATGACAAAAGTGGACGCAGGAAAAGACAGACATGGCTTTGGGAAGAAGACAGAATTTTGAAG
TGTGGTGTAAAGAAATATGGAGAGGGAAATTGGGCTAAAATACTATCCCATTATAAGTTCAACAACCGAA
CAAGTGTCATGTTAAAAGATAGATGGAGAACAATGAAGAGACTGAAACTGATTAGCTGA

Translation (392 aa):
MAETVSSAARDAPSREGWTDSDSPEQEEVGDDAELLQCQLQLGTPREMENAELVAEVEAVAAGWMLDFLC
LSLCRAFRDGRSEDFRRTRDSAEAIIHGLHRLTAYQLKTVYICQFLTRVASGKALDAQFEVDERITPLES
ALMIWNSIEKEHDKLHDEIKNLIKIQPLERKLLKIISQKDVFHSLFQHFSYSCMMEKIQSYVGDVLSEKS
STFLMKAATKVVENEKARTQASKDRPDATNTGMDTEVGLNKEKSVNGQQSTETEPLVDTVSSIRSHKNAL
SQLKHRRAPSDFSRNEARTGTLQCETTMERNRRTSGRNRLCVSENQPDTDDKSGRRKRQTWLWEEDRILK
CGVKKYGEGNWAKILSHYKFNNRTSVMLKDRWRTMKRLKLIS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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