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Report for CCDS7835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7835.1 Public Homo sapiens 11 SAA1 24 110 108 CCDS HistoryNCBI Gene:6288Re-query CCDS DB by CCDS ID:7835.1Re-query CCDS DB by GeneID:6288See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356524.9 ENSP00000348918.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356524.9Link to Ensembl Protein Viewer:ENSP00000348918.4Re-query CCDS DB by Nucleotide ID:ENST00000356524Re-query CCDS DB by Protein ID:ENSP00000348918
Original member Current member EBI ENST00000405158.2 ENSP00000384906.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405158.2Link to Ensembl Protein Viewer:ENSP00000384906.2Re-query CCDS DB by Nucleotide ID:ENST00000405158Re-query CCDS DB by Protein ID:ENSP00000384906
Original member Current member EBI ENST00000532858.5 ENSP00000436866.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532858.5Link to Ensembl Protein Viewer:ENSP00000436866.1Re-query CCDS DB by Nucleotide ID:ENST00000532858Re-query CCDS DB by Protein ID:ENSP00000436866
Original member Current member NCBI NM_000331.6 NP_000322.3 Accepted alive Link to Nucleotide Sequence:NM_000331.6Link to Protein Sequence:NP_000322.3Re-query CCDS DB by Nucleotide ID:NM_000331Re-query CCDS DB by Protein ID:NP_000322Link to BLAST:NP_000322.3
Original member Current member NCBI NM_001178006.3 NP_001171477.2 Accepted alive Link to Nucleotide Sequence:NM_001178006.3Link to Protein Sequence:NP_001171477.2Re-query CCDS DB by Nucleotide ID:NM_001178006Re-query CCDS DB by Protein ID:NP_001171477Link to BLAST:NP_001171477.2
Original member Current member NCBI NM_199161.5 NP_954630.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199161.5Link to Protein Sequence:NP_954630.2Re-query CCDS DB by Nucleotide ID:NM_199161Re-query CCDS DB by Protein ID:NP_954630Link to BLAST:NP_954630.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000322.3 122 P0DJI8 122 100% 0 0
NP_001171477.2 122 P0DJI8 122 100% 0 0
NP_954630.2 122 P0DJI8 122 100% 0 0

Chromosomal Locations for CCDS 7835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18266888 18266978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18269195 18269333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18269717 18269855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGT
TCCTTGGCGAGGCTTTTGATGGGGCTCGGGACATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTA
CATCGGCTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACCTGGGGGTGCC
TGGGCTGCAGAAGTGATCACCGATGCCAGAGAGAATATCCAGAGATTCTTTGGCCATGGTGCGGAGGACT
CGCTGGCTGATCAGGCTGCCAATGAATGGGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGG
CCTGCCTGAGAAATACTGA

Translation (122 aa):
MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGA
WAAEVITDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPEKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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