NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78287.1 Public Homo sapiens 7 AGAP3 24 110 108 CCDS HistoryNCBI Gene:116988Re-query CCDS DB by CCDS ID:78287.1Re-query CCDS DB by GeneID:116988See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335367.7 ENSP00000335589.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335367.7Link to Ensembl Protein Viewer:ENSP00000335589.3Re-query CCDS DB by Nucleotide ID:ENST00000335367Re-query CCDS DB by Protein ID:ENSP00000335589
Original member Current member NCBI NM_001308305.2 NP_001295234.1 Accepted alive Link to Nucleotide Sequence:NM_001308305.2Link to Protein Sequence:NP_001295234.1Re-query CCDS DB by Nucleotide ID:NM_001308305Re-query CCDS DB by Protein ID:NP_001295234Link to BLAST:NP_001295234.1

Chromosomal Locations for CCDS 78287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151114771 151115641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151116793 151116851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151117095 151117182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151117371 151117456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151117636 151117777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151118210 151118344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151118505 151118632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151119987 151120145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151122725 151122787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGAGCGGGGCTGGCCGCAGGGGGACAGCTGTCCCGGGGAGCGGCCCGCCGCTTGCCGCCGCGCCCACA
GCGTCTGCGACTCGCTGGACCTGCACGGCGCCTCGGCCGGCCGCGCTGCCGCCGCCCTGCAGGCCGCCCT
CTGCGCCGCCAGTGAGCAGCCGGCGCGGCCGCGGAGCGTGTGCTCGGGCGGCCCGGAGCCGCCGCCCACC
GGCGCCCGCGGCCTTTTGCTCGGCCTCCTGCGCCCGCGCCTCGGCCGCCGGGGCCTGGCGCCCTCGGGAC
CGCCCGTCTCGCCTGCGCCCAGCCCCGCGTCCAGCCCCGCGCCGACCCGGCGCAGCCGCACCCGCGGGGA
GCCGACTCCGCGGCCCCGGCCGGCCAGCATGACTTTCCTGGAGGTGAACCGCCTGGAGCTGGCGGCCGCC
GAGGCGCCGGGCGCGGGTCTGGGGCGCGCGGGCAGCGCGGGCTTCCTGCGCGGCGCGGCGTTGTGGAGCA
GCCAGCGCTGGCCAGTGCTGCGCGGCGGGCGCGGGCCGGAGGGGCCCCGGCGCGGCCTGGCGGCGCTCAG
GAAGAGCTTCAGCTTCCGCCTGCGCCGCGGCCAGGAGGTGCGGCGCTCCGAGTCAGGGCTGCTGGCCCGG
CCGCCGCGCGCGCGCACCCGTAGCGACGGCGACGCCGGCTCCCTAGGCGCCTTCCCCAGCCGCCGCGACC
TGCTGGGCTCCGACGCCCCGCGCGCAGCGCCGGAGCCCGGCCGCCCCCGCACCGCCGCCGGCCTCTGGAG
GCTGCTCACGAGCCGCTTCCGCCGGAGGGAGCCCGCGCCCGCCGCGCCGCTGTGGGGCCGTCGGGCGGCT
GCGGCCCCGGAGCTCCTGCGCGCGCCCAGCGACTCGTTTGTGAACAGCCAGGAGTGGACGCTGAGCCGCT
CCGTACCGGAGCTTAAAGTGGGCATAGTGGGGAACCTGTCTAGCGGGAAGTCAGCCCTGGTGCACCGCTA
TCTGACGGGGACCTATGTCCAGGAGGAGTCCCCTGAAGGGGGGCGGTTTAAGAAGGAGATTGTGGTGGAT
GGCCAGAGTTACCTGCTGCTGATCCGAGATGAAGGAGGCCCCCCTGAGCTCCAGTTTGCTGCCTGGGTGG
ATGCAGTGGTGTTTGTGTTCAGCCTGGAGGATGAAATCAGTTTCCAGACGGTGTACAACTACTTCCTGCG
TCTCTGCAGCTTCCGCAACGCCAGCGAGGTGCCCATGGTGCTTGTGGGCACGCAGGATGCCATCAGCGCT
GCGAATCCCCGGGTTATCGACGACAGCAGAGCCCGCAAGCTCTCCACAGATCTGAAGCGGTGCACCTACT
ATGAGACGTGCGCGACCTACGGGCTCAATGTGGAGCGTGTCTTCCAGGACGTGGCCCAGAAGGTAGTGGC
CTTGCGAAAGAAGCAGCAACTGGCCATCGGGCCCTGCAAGTCACTGCCCAACTCGCCCAGCCACTCGGCC
GTGTCCGCCGCCTCCATCCCGGCCGTGCACATCAACCAGGCCACGAATGGCGGCGGCAGCGCCTTCAGCG
ACTACTCGTCCTCAGTCCCCTCCACCCCCAGCATCAGCCAGCGGGAGCTGCGCATCGAGACCATCGCTGC
CTCCTCCACCCCCACACCCATCCGAAAGCAGTCCAAGCGGCGCTCCAACATCTTCACGATATGTGCCACT
GTTTCCAACTTTTCATCAACAAAAAGGCCTTTCCAACTCCTTCCAAATTAG

Translation (576 aa):
MERGWPQGDSCPGERPAACRRAHSVCDSLDLHGASAGRAAAALQAALCAASEQPARPRSVCSGGPEPPPT
GARGLLLGLLRPRLGRRGLAPSGPPVSPAPSPASSPAPTRRSRTRGEPTPRPRPASMTFLEVNRLELAAA
EAPGAGLGRAGSAGFLRGAALWSSQRWPVLRGGRGPEGPRRGLAALRKSFSFRLRRGQEVRRSESGLLAR
PPRARTRSDGDAGSLGAFPSRRDLLGSDAPRAAPEPGRPRTAAGLWRLLTSRFRRREPAPAAPLWGRRAA
AAPELLRAPSDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD
GQSYLLLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA
ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKKQQLAIGPCKSLPNSPSHSA
VSAASIPAVHINQATNGGGSAFSDYSSSVPSTPSISQRELRIETIAASSTPTPIRKQSKRRSNIFTICAT
VSNFSSTKRPFQLLPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH