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Report for CCDS77172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77172.1 Public Homo sapiens 18 CDH2 24 110 108 CCDS HistoryNCBI Gene:1000Re-query CCDS DB by CCDS ID:77172.1Re-query CCDS DB by GeneID:1000See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399380.7 ENSP00000382312.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399380.7Link to Ensembl Protein Viewer:ENSP00000382312.3Re-query CCDS DB by Nucleotide ID:ENST00000399380Re-query CCDS DB by Protein ID:ENSP00000382312
Original member Current member NCBI NM_001308176.2 NP_001295105.1 Accepted alive Link to Nucleotide Sequence:NM_001308176.2Link to Protein Sequence:NP_001295105.1Re-query CCDS DB by Nucleotide ID:NM_001308176Re-query CCDS DB by Protein ID:NP_001295105Link to BLAST:NP_001295105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295105.1 875 P19022-2 875 100% 0 0

Chromosomal Locations for CCDS 77172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 27952153 27952359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27963357 27963521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27982944 27983083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27985000 27985233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27985528 27985761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27988524 27988666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27990097 27990350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27992655 27992840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 27993500 27993637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 28002997 28003169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 28005849 28005993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 28009717 28009872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 28011846 28011992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 28013683 28013909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 28036470 28036548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGTTTTTATTAAGGCGTTATGTGTGTATCTTCACTGAGAAATTAAAGAACCAAGCAGAATTGTATGTTT
TCCTTTCAGTGAAGTTTAGCAACTGCAATGGAAAAAGAAAAGTACAATATGAGAGCAGTGAGCCTGCAGA
TTTTAAGGTGGATGAAGATGGCATGGTGTATGCCGTGAGAAGCTTTCCACTCTCTTCTGAGCATGCCAAG
TTCCTGATATATGCCCAAGACAAAGAGACCCAGGAAAAGTGGCAAGTGGCAGTAAAATTGAGCCTGAAGC
CAACCTTAACTGAGGAGTCAGTGAAGGAGTCAGCAGAAGTTGAAGAAATAGTGTTCCCAAGACAATTCAG
TAAGCACAGTGGCCACCTACAAAGGCAGAAGAGAGACTGGGTCATCCCTCCAATCAACTTGCCAGAAAAC
TCCAGGGGACCTTTTCCTCAAGAGCTTGTCAGGATCAGGTCTGATAGAGATAAAAACCTTTCACTGCGGT
ACAGTGTAACTGGGCCAGGAGCTGACCAGCCTCCAACTGGTATCTTCATTATCAACCCCATCTCGGGTCA
GCTGTCGGTGACAAAGCCCCTGGATCGCGAGCAGATAGCCCGGTTTCATTTGAGGGCACATGCAGTAGAT
ATTAATGGAAATCAAGTGGAGAACCCCATTGACATTGTCATCAATGTTATTGACATGAATGACAACAGAC
CTGAGTTCTTACACCAGGTTTGGAATGGGACAGTTCCTGAGGGATCAAAGCCTGGAACATATGTGATGAC
CGTAACAGCAATTGATGCTGACGATCCCAATGCCCTCAATGGGATGTTGAGGTACAGAATCGTGTCTCAG
GCTCCAAGCACCCCTTCACCCAACATGTTTACAATCAACAATGAGACTGGTGACATCATCACAGTGGCAG
CTGGACTTGATCGAGAAAAAGTGCAACAGTATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCC
CACATATGGCCTTTCAAACACAGCCACGGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCAGAG
TTTACTGCCATGACGTTTTATGGTGAAGTTCCTGAGAACAGGGTAGACATCATAGTAGCTAATCTAACTG
TGACCGATAAGGATCAACCCCATACACCAGCCTGGAACGCAGTGTACAGAATCAGTGGCGGAGATCCTAC
TGGACGGTTCGCCATCCAGACCGACCCAAACAGCAACGACGGGTTAGTCACCGTGGTCAAACCAATCGAC
TTTGAAACAAATAGGATGTTTGTCCTTACTGTTGCTGCAGAAAATCAAGTGCCATTAGCCAAGGGAATTC
AGCACCCCCCTCAGTCAACTGCAACCGTGTCTGTTACAGTTATTGACGTAAATGAAAACCCTTATTTTGC
CCCCAATCCTAAGATCATTCGCCAAGAAGAAGGGCTTCATGCCGGTACCATGTTGACAACATTCACTGCT
CAGGACCCAGATCGATATATGCAGCAAAATATTAGATACACTAAATTATCTGATCCTGCCAATTGGCTAA
AAATAGATCCTGTGAATGGACAAATAACTACAATTGCTGTTTTGGACCGAGAATCACCAAATGTGAAAAA
CAATATATATAATGCTACTTTCCTTGCTTCTGACAATGGAATTCCTCCTATGAGTGGAACAGGAACGCTG
CAGATCTATTTACTTGATATTAATGACAATGCCCCTCAAGTGTTACCTCAAGAGGCAGAGACTTGCGAAA
CTCCAGACCCCAATTCAATTAATATTACAGCACTTGATTATGACATTGATCCAAATGCTGGACCATTTGC
TTTTGATCTTCCTTTATCTCCAGTGACTATTAAGAGAAATTGGACCATCACTCGGCTTAATGGTGATTTT
GCTCAGCTTAATTTAAAGATAAAATTTCTTGAAGCTGGTATCTATGAAGTTCCCATCATAATCACAGATT
CGGGTAATCCTCCCAAATCAAATATTTCCATCCTGCGTGTGAAGGTTTGCCAGTGTGACTCCAACGGGGA
CTGCACAGATGTGGACAGGATTGTGGGTGCGGGGCTTGGCACCGGTGCCATCATTGCCATCCTGCTCTGC
ATCATCATCCTGCTTATCCTTGTGCTGATGTTTGTGGTATGGATGAAACGCCGGGATAAAGAACGCCAGG
CCAAACAACTTTTAATTGATCCAGAAGATGATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGG
AGGAGAAGAAGACCAGGACTATGACTTGAGCCAGCTGCAGCAGCCTGACACTGTGGAGCCTGATGCCATC
AAGCCTGTGGGAATCCGACGAATGGATGAAAGACCCATCCACGCCGAGCCCCAGTATCCGGTCCGATCTG
CAGCCCCACACCCTGGAGACATTGGGGACTTCATTAATGAGGGCCTTAAAGCGGCTGACAATGACCCCAC
AGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCCTTGAGC
TCCCTTAATTCCTCAAGTAGTGGTGGTGAGCAGGACTATGATTACCTGAACGACTGGGGGCCACGGTTCA
AGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA

Translation (875 aa):
MFLLRRYVCIFTEKLKNQAELYVFLSVKFSNCNGKRKVQYESSEPADFKVDEDGMVYAVRSFPLSSEHAK
FLIYAQDKETQEKWQVAVKLSLKPTLTEESVKESAEVEEIVFPRQFSKHSGHLQRQKRDWVIPPINLPEN
SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREQIARFHLRAHAVD
INGNQVENPIDIVINVIDMNDNRPEFLHQVWNGTVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQ
APSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPE
FTAMTFYGEVPENRVDIIVANLTVTDKDQPHTPAWNAVYRISGGDPTGRFAIQTDPNSNDGLVTVVKPID
FETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTFTA
QDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTL
QIYLLDINDNAPQVLPQEAETCETPDPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTITRLNGDF
AQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVDRIVGAGLGTGAIIAILLC
IIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTVEPDAI
KPVGIRRMDERPIHAEPQYPVRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLS
SLNSSSSGGEQDYDYLNDWGPRFKKLADMYGGGDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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