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Report for CCDS76491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76491.1 Public Homo sapiens 11 MSANTD2 24 110 108 CCDS HistoryNCBI Gene:79684Re-query CCDS DB by CCDS ID:76491.1Re-query CCDS DB by GeneID:79684See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76491.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374979.8 ENSP00000364118.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374979.8Link to Ensembl Protein Viewer:ENSP00000364118.3Re-query CCDS DB by Nucleotide ID:ENST00000374979Re-query CCDS DB by Protein ID:ENSP00000364118
Original member Current member NCBI NM_001308027.2 NP_001294956.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308027.2Link to Protein Sequence:NP_001294956.1Re-query CCDS DB by Nucleotide ID:NM_001308027Re-query CCDS DB by Protein ID:NP_001294956Link to BLAST:NP_001294956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294956.1 559 Q6P1R3-1 559 100% 0 0

Chromosomal Locations for CCDS 76491.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124767176 124768028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124772994 124773054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124774719 124774974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124799871 124800380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCTGCGCCCTGTGGCTCGGAGCTGCCCGCCAACTCGCCGCTAAAAATTCCGAAGATGGAGGTGCTTT
CCCCGGCTTCTCCTGGTGGCCTGAGCGACGGAAATCCATCGCTGTCCGACCCTTCCACGCCTCGGGGTGC
CTCCCCGCTCGGGCCGGGCAGTGCGGCGGGCTCGGGGGCAGCGGCGTCCGGGGGTCTCGGGCTGGGGCTG
GGGGGCCGCAGCGCCGCCTCGTCCTCGGTCTCCTTCTCCCCTGGTGGCGGCGGTGGCGGGGCTGCGGCAG
CCGCCGCCGCCGCCTGCCGGGGCATGTCGTGGACGCCAGCCGAGACGAACGCGCTCATCGCAGTGTGGGG
CAACGAGCGGCTGGTGGAGGCGCGGTACCAGCAGCTGGAGGGAGCCGGCACGGTGTTCGGCAGCAAGGCC
CCCGGGCCAGCCATGTACGAGCGCGTGTCCCGGGCCCTGGCCGAGCTGGGCTACGAGCGGACCCCGTCCC
AGTGCCGGGAGCGCATCAAGACCCTTCGCAGGTGTTACAGTCGGGTGAAAGAACATGGTGTTGGGAAAAG
AAAGAGCAGTTACACATTTGAACAGTTGGAACAGGTGTTTGGTCAGGGAGGATGGGATGCTCAGCCCTGC
CAGCCTGTACTTATTAACAGTAGTGGCTTGTACCAGGAGCTGGAGTCAGATGGCAGCACTATGGAGGACT
ATTCACAGGAGGACTGGGGAAACCACAGTCAGGATCTCCATGGCTATCCAACAGATCAGGAATTGGATGA
AATACCTGTCACAAAGAGAACATTAAAAATAAAACAAGAGTCTTCTGAAGAAGCACAGAAGAGAGACATC
ATGCAGAATATTGTACAGATTTTGGAATCGGTACAGTTGAAATGGGAACTTTTTCAGAGCTGGACAGACT
TTTCAAGGCTCCATCTTTCTAATAAACTGGCCATTTTTGGAATTGGTTATAACACCCGTTGGAAAGAGGA
TATCCGTTACCATTATGCTGAGATCAGCTCCCAGGTGCCCCTTGGCAAGCGACTTCGGGAGTACTTCAAC
TCTGAGAAGCCTGAAGGACGGATCATTATGACCCGAGTGCAGAAAATGAACTGGAAAAATGTTTACTACA
AATTTTTAGAGATCACTATTAGCGAAGCTAGGTGCTTGGAGCTGCACATGGAAATTGACTGGATACCCAT
TGCCCACTCCAAACCAACTGGTGGGAATGTTGTTCAATATTTATTGCCTGGGGGTATTCCTAAAAGCCCA
GGCCTTTATGCCATTGGCTATGAAGAATGTATTGAGAGGCCCCTCTCACCACACATGGAGCAAAGTTCCC
TGGACCCAGGAAAAGAGGGCCGGGTTGACCTGGAAACCCTTTCAGCACAAGCCTCATTACAGGTGGAAAT
AGAACCCACCCGAATTATCTATTGCTACCTCGGGATTGCTGAGGTCAGGACTCTACAGCAGTGCTTATTT
TTACATTTCCAAGCGAATACCAAAACCTTCAGCAAAGATTGGGTTGGTATTAACGGGTTTTTGTCTCAGA
ACTGTATTGTGGATCCCGGAGTTTCCCCCAAATCCATCTACATCAAATTTGTAGAAGTAGAGAGGGATTT
TCTTTCCGCAGGCTCTTTAGTTGAGTGCCTGGAAAAAGCCATTGGATACCCCTTAAAATTTAACAACTGA

Translation (559 aa):
MAAPCGSELPANSPLKIPKMEVLSPASPGGLSDGNPSLSDPSTPRGASPLGPGSAAGSGAAASGGLGLGL
GGRSAASSSVSFSPGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKA
PGPAMYERVSRALAELGYERTPSQCRERIKTLRRCYSRVKEHGVGKRKSSYTFEQLEQVFGQGGWDAQPC
QPVLINSSGLYQELESDGSTMEDYSQEDWGNHSQDLHGYPTDQELDEIPVTKRTLKIKQESSEEAQKRDI
MQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFN
SEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSP
GLYAIGYEECIERPLSPHMEQSSLDPGKEGRVDLETLSAQASLQVEIEPTRIIYCYLGIAEVRTLQQCLF
LHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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