NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7613.1 Public Homo sapiens 10 TIAL1 24 110 108 CCDS HistoryNCBI Gene:7073Re-query CCDS DB by CCDS ID:7613.1Re-query CCDS DB by GeneID:7073See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436547.7 ENSP00000394902.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436547.7Link to Ensembl Protein Viewer:ENSP00000394902.2Re-query CCDS DB by Nucleotide ID:ENST00000436547Re-query CCDS DB by Protein ID:ENSP00000394902
Original member Current member NCBI NM_003252.4 NP_003243.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003252.4Link to Protein Sequence:NP_003243.1Re-query CCDS DB by Nucleotide ID:NM_003252Re-query CCDS DB by Protein ID:NP_003243Link to BLAST:NP_003243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003243.1 375 Q01085-1 375 100% 0 0

Chromosomal Locations for CCDS 7613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 119575665 119575791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119576611 119576750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119577080 119577203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119577451 119577535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119577641 119577736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119578726 119578834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119579935 119580010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119581922 119582009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119582169 119582223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119582459 119582557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119588152 119588248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119596434 119596465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGATGGAAGACGACGGGCAGCCCCGGACTCTATACGTAGGTAACCTTTCCAGAGATGTGACAGAAGTCC
TTATACTTCAGTTGTTCAGTCAGATTGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCATACAAGCAA
TGACCCATATTGCTTTGTGGAATTTTATGAACACAGAGATGCAGCTGCTGCATTAGCTGCTATGAATGGG
AGAAAAATTTTGGGAAAGGAGGTCAAAGTAAACTGGGCAACCACACCAAGTAGCCAGAAAAAAGATACTT
CCAATCACTTCCATGTGTTTGTTGGGGATTTGAGTCCAGAAATTACAACAGAAGATATCAAATCAGCATT
TGCCCCCTTTGGTAAAATATCGGATGCCCGGGTAGTTAAAGACATGGCAACTGGAAAATCCAAAGGCTAT
GGTTTTGTATCTTTTTATAACAAACTGGATGCAGAAAATGCGATTGTGCATATGGGCGGTCAGTGGTTGG
GTGGTCGTCAAATCCGAACCAATTGGGCCACTCGTAAACCACCTGCACCTAAAAGTACACAAGAAAACAA
CACTAAGCAGTTGAGATTTGAAGATGTAGTAAACCAGTCAAGTCCAAAAAATTGTACTGTGTACTGTGGA
GGAATTGCGTCTGGGTTAACAGATCAGCTTATGAGACAGACATTCTCACCATTTGGACAAATTATGGAAA
TAAGAGTTTTCCCAGAAAAGGGCTATTCATTTGTCAGATTTTCAACCCATGAAAGTGCAGCCCATGCCAT
TGTTTCGGTGAACGGTACTACGATTGAAGGACATGTGGTTAAATGCTATTGGGGTAAAGAATCTCCTGAT
ATGACTAAAAACTTCCAACAGGTTGACTATAGTCAATGGGGCCAATGGAGCCAAGTGTATGGAAACCCAC
AACAGTATGGACAGTATATGGCAAATGGGTGGCAAGTACCGCCTTATGGAGTATACGGGCAACCATGGAA
TCAACAAGGATTTGGAGTAGATCAATCACCTTCTGCTGCTTGGATGGGTGGATTTGGTGCTCAGCCTCCC
CAAGGACAAGCTCCTCCCCCTGTAATACCTCCTCCTAACCAAGCCGGATATGGTATGGCAAGTTACCAAA
CACAGTGA

Translation (375 aa):
MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG
RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY
GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCG
GIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD
MTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPP
QGQAPPPVIPPPNQAGYGMASYQTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH