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Report for CCDS75651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75651.1 Public Homo sapiens 7 CDHR3 24 110 108 CCDS HistoryNCBI Gene:222256Re-query CCDS DB by CCDS ID:75651.1Re-query CCDS DB by GeneID:222256See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75651.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478080.5 ENSP00000417771.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478080.5Link to Ensembl Protein Viewer:ENSP00000417771.1Re-query CCDS DB by Nucleotide ID:ENST00000478080Re-query CCDS DB by Protein ID:ENSP00000417771
Original member Current member NCBI NM_001301161.2 NP_001288090.1 Accepted alive Link to Nucleotide Sequence:NM_001301161.2Link to Protein Sequence:NP_001288090.1Re-query CCDS DB by Nucleotide ID:NM_001301161Re-query CCDS DB by Protein ID:NP_001288090Link to BLAST:NP_001288090.1

Chromosomal Locations for CCDS 75651.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105980983 105981133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105984192 105984289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105994751 105994845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105996250 105996354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106001462 106001610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106004498 106004687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106012860 106013031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106015111 106015213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106015927 106016025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106017846 106018072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106020373 106020544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106022198 106022448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106024381 106024562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106026682 106026695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106028551 106028582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106030792 106030840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 106032393 106032697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGAACAACTAGATTTTGAAACAGGACCAAACATATTTGATTTGCAGATTTATGTGAAGGATGAGGTTG
GTGTCACAGACCTGCAAGTCCTGACTGTCCAGGTAACAGATGTGAACGAGCCACCTCAGTTTCAAGGCAA
CTTGGCAGAAGGTCTACACCTCTACATAGTAGAAAGAGCAAACCCTGGATTCATTTACCAGGTTGAGGCC
TTCGATCCAGAAGACACAAGCCGAAACATTCCCCTCAGTTATTTCCTGATTTCTCCCCCAAAGAGCTTCA
GAATGTCTGCTAATGGCACCCTCTTCTCCACAACAGAATTGGACTTTGAAGCAGGACACAGAAGTTTCCA
TCTCATCGTGGAGGTGAGGGACAGTGGAGGCCTCAAAGCCTCCACAGAGCTCCAGGTGAACATCGTGAAC
CTCAACGACGAAGTCCCTCGCTTTACCAGCCCGACACGAGTGTACACAGTCCTGGAGGAACTGAGTCCAG
GAACCATCGTGGCCAATATCACAGCGGAGGATCCTGATGATGAAGGTTTTCCCAGCCACCTCCTCTACAG
CATTACCACTGTTAGCAAATATTTCATGATAAATCAGTTGACTGGTACAATCCAAGTGGCCCAAAGGATA
GACCGAGATGCAGGTGAATTGAGACAAAATCCCACCATTTCCCTGGAAGTTCTAGTGAAGGACAGACCAT
ATGGGGGTCAGGAGAATCGCATCCAGATAACCTTCATTGTGGAAGACGTCAACGACAATCCTGCCACATG
CCAAAAGTTCACCTTCAGCATTATGGTGCCGGAAAGAACAGCCAAGGGGACGTTGCTTCTTGACCTAAAC
AAGTTCTGCTTTGATGATGACAGTGAGGCACCAAACAACAGATTCAACTTCACCATGCCATCTGGAGTGG
GGAGCGGCAGCAGATTTTTACAGGATCCAGCTGGCTCTGGGAAGATTGTGCTGATTGGTGATCTAGACTA
CGAAAATCCAAGTAACCTAGCAGCCGGCAATAAATATACGGTGATAATCCAGGTGCAGGATGTGGCCCCC
CCTTACTATAAAAATAACGTCTACGTTTATATCCTAACAAGCCCAGAAAATGAGTTTCCTCTCATTTTTG
ATAGGCCATCCTATGTATTTGATGTGTCAGAAAGAAGGCCCGCCAGAACCCGAGTGGGACAGGTGCGAGC
CACTGATAAAGACCTCCCCCAGAGCAGCCTCCTGTACTCCATCTCCACTGGAGGGGCCAGCCTCCAGTAT
CCAAATGTATTTTGGATTAATCCCAAGACAGGAGAACTCCAGCTGGTAACTAAAGTGGACTGTGAAACAA
CCCCCATCTATATTCTCAGAATCCAGGCCACCAACAACGAAGACACAAGCTCTGTCACTGTTACTGTGAA
CATCCTTGAAGAAAATGATGAAAAGCCAATTTGTACTCCAAACTCTTATTTCCTGGCCCTCCCAGTGGAT
CTGAAAGTTGGCACAAATATTCAGAATTTCAAGCTGACATGTACCGACCTTGATTCCAGCCCCAGATCTT
TCCGTTATTCCATTGGCCCAGGTAACGTCAACAATCATTTCACCTTCTCTCCCAATGCTGGTTCCAATGT
CACACGCCTGCTGCTTACATCTCGCTTTGACTATGCTGGTGGGTTTGATAAGATCTGGGACTACAAGCTA
CTTGTCTACGTAACTGATGACAACTTGATGTCTGACAGGAAGAAAGCGGAGGCTCTTGTTGAGACAGGAA
CAGTGACACTGAGTATTAAAGTCATTCCCCACCCAACCACTATCATCACCACGACCCCCAGGCCCAGGGT
CACCTATCAGGTCCTGAGGAAAAACGTTTACTCTCCATCTGCATGGTACGTGCCGTTTGTCATCACTTTG
GGCTCCATATTGCTTCTGGGTCTCCTCGTGTACCTGGTCGTCCTATTGGCCAAAGCCATCCACAGACACT
GCCCCTGCAAGACTGGGAAGAACAAGGAACCTCTGACAAAGAAAGGAGAAACGAAGACTGCAGAGAGAGA
CGTCGTGGTGGAAACTATCCAGATGAACACTATCTTTGATGGAGAAGCCATAGATCCAGTGACCGGGGAA
ACATATGAATTCAACTCAAAAACTGGAGCCAGAAAGTGGAAAGATCCACTAACCCAAATGCCAAAATGGA
AAGAGTCCAGCCACCAGGGAGCTGCCCCACGCAGAGTCACTGCTGGGGAAGGGATGGGGTCACTGAGAAG
TGCCAACTGGGAAGAAGATGAGCTGAGTGGCAAAGCGTGGGCTGAGGATGCTGGTCTGGGTTCCAGAAAT
GAGGGTGGCAAGCTGGGCAACCCAAAGAACAGAAATCCAGCCTTCATGAACAGGGCTTACCCCAAACCAC
ACCCAGGAAAGTAA

Translation (797 aa):
MEQLDFETGPNIFDLQIYVKDEVGVTDLQVLTVQVTDVNEPPQFQGNLAEGLHLYIVERANPGFIYQVEA
FDPEDTSRNIPLSYFLISPPKSFRMSANGTLFSTTELDFEAGHRSFHLIVEVRDSGGLKASTELQVNIVN
LNDEVPRFTSPTRVYTVLEELSPGTIVANITAEDPDDEGFPSHLLYSITTVSKYFMINQLTGTIQVAQRI
DRDAGELRQNPTISLEVLVKDRPYGGQENRIQITFIVEDVNDNPATCQKFTFSIMVPERTAKGTLLLDLN
KFCFDDDSEAPNNRFNFTMPSGVGSGSRFLQDPAGSGKIVLIGDLDYENPSNLAAGNKYTVIIQVQDVAP
PYYKNNVYVYILTSPENEFPLIFDRPSYVFDVSERRPARTRVGQVRATDKDLPQSSLLYSISTGGASLQY
PNVFWINPKTGELQLVTKVDCETTPIYILRIQATNNEDTSSVTVTVNILEENDEKPICTPNSYFLALPVD
LKVGTNIQNFKLTCTDLDSSPRSFRYSIGPGNVNNHFTFSPNAGSNVTRLLLTSRFDYAGGFDKIWDYKL
LVYVTDDNLMSDRKKAEALVETGTVTLSIKVIPHPTTIITTTPRPRVTYQVLRKNVYSPSAWYVPFVITL
GSILLLGLLVYLVVLLAKAIHRHCPCKTGKNKEPLTKKGETKTAERDVVVETIQMNTIFDGEAIDPVTGE
TYEFNSKTGARKWKDPLTQMPKWKESSHQGAAPRRVTAGEGMGSLRSANWEEDELSGKAWAEDAGLGSRN
EGGKLGNPKNRNPAFMNRAYPKPHPGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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