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Report for CCDS7559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7559.1 Public Homo sapiens 10 SORCS1 24 110 108 CCDS HistoryNCBI Gene:114815Re-query CCDS DB by CCDS ID:7559.1Re-query CCDS DB by GeneID:114815See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263054.11 ENSP00000263054.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263054.11Link to Ensembl Protein Viewer:ENSP00000263054.5Re-query CCDS DB by Nucleotide ID:ENST00000263054Re-query CCDS DB by Protein ID:ENSP00000263054
Original member Current member NCBI NM_052918.5 NP_443150.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052918.5Link to Protein Sequence:NP_443150.3Re-query CCDS DB by Nucleotide ID:NM_052918Re-query CCDS DB by Protein ID:NP_443150Link to BLAST:NP_443150.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443150.3 1168 Q8WY21-1 1168 100% 0 0

Chromosomal Locations for CCDS 7559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 106577420 106577555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106579369 106579474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106597351 106597450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106607166 106607297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106611911 106612023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106618149 106618272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106620428 106620561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106629202 106629388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106652382 106652553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106667689 106667802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106671237 106671367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106672868 106672985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106675049 106675156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106677313 106677404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106679256 106679332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106679632 106679734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106688192 106688338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106699214 106699393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106706545 106706634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106709223 106709341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106730050 106730114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106761588 106761661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106776534 106776692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106829574 106829673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 106956513 106956580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107163969 107164526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3507 nt):
ATGGGAAAAGTTGGCGCCGGCGGCGGCTCCCAAGCCCGGCTGAGCGCGCTCCTCGCCGGCGCGGGGCTCT
TGATCCTCTGCGCCCCGGGCGTCTGCGGCGGCGGCTCCTGCTGCCCCTCGCCGCACCCCAGCTCCGCTCC
ACGCTCGGCCTCGACCCCTAGGGGCTTTTCCCACCAGGGGCGGCCAGGCAGGGCTCCTGCCACGCCCCTG
CCCCTCGTAGTGCGTCCCCTGTTCTCAGTGGCCCCCGGGGACCGAGCGCTATCCCTGGAGCGGGCTCGGG
GCACTGGGGCATCCATGGCGGTTGCTGCACGCTCCGGCCGGAGGAGACGGAGCGGAGCGGATCAGGAGAA
GGCAGAACGGGGAGAGGGCGCGAGTCGGAGCCCCCGGGGAGTGCTAAGAGATGGAGGGCAGCAGGAGCCT
GGGACTCGGGAGCGGGACCCGGACAAAGCCACCCGCTTCCGGATGGAGGAGCTGAGACTGACCAGCACCA
CGTTTGCGCTGACGGGAGACTCAGCACACAACCAAGCCATGGTCCACTGGTCTGGCCACAACAGCAGCGT
GATTCTCATTTTGACAAAGCTCTATGACTATAACCTGGGGAGCATCACAGAGAGCTCGCTTTGGAGGTCA
ACCGATTATGGAACAACCTATGAGAAGCTGAATGATAAAGTTGGTTTGAAAACCATTTTGAGCTATCTCT
ATGTGTGTCCTACCAACAAGCGTAAGATAATGTTACTCACAGACCCGGAGATTGAGAGCAGTTTATTGAT
CAGCTCAGATGAAGGGGCAACTTATCAAAAGTACCGGCTGAACTTCTACATTCAAAGCTTGCTTTTTCAC
CCCAAACAAGAAGACTGGATTCTGGCATACAGTCAAGACCAAAAGTTATACAGCTCTGCTGAATTTGGGA
GAAGATGGCAGCTTATCCAAGAAGGGGTTGTACCAAACAGGTTCTACTGGTCTGTGATGGGGTCAAATAA
AGAACCAGACCTTGTGCATCTTGAGGCCAGAACTGTGGATGGTCATTCACATTATCTAACTTGCCGAATG
CAGAACTGTACAGAGGCCAACAGGAATCAGCCTTTTCCAGGCTACATTGACCCAGACTCTTTGATTGTTC
AGGATCATTATGTGTTTGTTCAGCTGACATCAGGAGGGCGGCCACATTACTACGTGTCCTACCGAAGGAA
TGCATTTGCCCAAATGAAGCTTCCGAAATATGCTTTGCCCAAGGACATGCATGTTATCAGCACCGATGAG
AATCAGGTGTTCGCAGCGGTCCAAGAATGGAACCAGAATGACACGTACAACCTCTACATCTCAGACACAC
GTGGTGTCTACTTCACCCTGGCCTTGGAGAATGTCCAGAGCAGCAGAGGCCCTGAGGGCAACATCATGAT
CGACCTCTATGAGGTAGCAGGGATAAAGGGAATGTTCTTGGCTAACAAGAAGATTGACAACCAAGTGAAG
ACTTTCATCACATATAACAAAGGCAGAGACTGGCGTTTGCTGCAGGCGCCGGACACGGATCTAAGGGGGG
ACCCCGTGCACTGCTTGCTGCCCTATTGCTCACTACACCTTCACCTGAAGGTCTCTGAGAATCCCTACAC
ATCAGGGATCATTGCCAGCAAAGACACAGCTCCAAGCATCATAGTGGCATCAGGTAATATAGGTTCTGAA
TTGTCAGACACTGACATCAGCATGTTTGTCTCTTCAGATGCAGGGAACACCTGGAGACAGATCTTTGAAG
AAGAGCACAGTGTTTTGTACCTGGATCAAGGTGGAGTCCTGGTTGCTATGAAACACACATCTCTCCCAAT
TCGACATCTTTGGTTGAGTTTTGATGAAGGGAGATCTTGGAGCAAATACAGTTTCACATCTATTCCACTT
TTTGTGGATGGGGTTCTGGGTGAGCCTGGAGAAGAGACTCTCATCATGACAGTGTTTGGACACTTCAGCC
ACCGCTCTGAATGGCAGCTGGTCAAAGTAGATTACAAGTCCATTTTTGATAGACGGTGTGCCGAAGAGGA
CTACAGACCTTGGCAGCTGCACAGCCAGGGGGAAGCATGTATCATGGGAGCAAAAAGGATATATAAGAAG
CGAAAATCAGAGCGGAAGTGTATGCAAGGAAAATATGCAGGAGCTATGGAATCTGAACCCTGTGTCTGCA
CTGAGGCTGATTTTGATTGCGACTATGGTTATGAGCGACACAGCAATGGCCAGTGCCTGCCGGCATTTTG
GTTCAATCCATCCTCTCTGTCAAAGGATTGCAGCTTGGGACAGAGTTACCTCAATAGTACTGGGTACAGG
AAGGTGGTTTCCAATAATTGCACTGATGGCGTAAGGGAACAGTACACTGCCAAACCGCAGAAGTGCCCAG
GGAAAGCCCCGCGGGGGCTGCGGATAGTCACGGCTGATGGAAAGCTGACAGCGGAACAAGGACACAACGT
CACTCTCATGGTGCAATTAGAAGAGGGTGATGTTCAGCGGACACTCATCCAAGTGGACTTTGGCGATGGT
ATCGCGGTGTCTTACGTCAATCTCAGCTCCATGGAAGATGGGATCAAACACGTCTATCAGAACGTGGGCA
TTTTCCGTGTGACCGTGCAGGTGGACAACAGTCTGGGTTCTGACAGCGCCGTCCTGTACTTACATGTAAC
TTGTCCCTTGGAGCACGTGCACCTGTCTCTTCCCTTTGTCACCACAAAGAACAAAGAGGTCAATGCGACG
GCAGTGCTGTGGCCCAGCCAAGTGGGCACCCTCACTTACGTGTGGTGGTACGGAAACAACACGGAGCCTT
TGATCACCTTGGAGGGAAGCATATCCTTCAGATTTACTTCAGAAGGAATGAATACCATCACAGTGCAGGT
CTCAGCTGGGAATGCCATCCTACAAGACACAAAGACCATCGCAGTATATGAGGAATTCCGGTCTCTTCGC
TTGTCCTTTTCTCCAAACCTGGATGACTACAACCCGGACATCCCTGAGTGGAGGAGGGACATCGGTCGAG
TCATCAAAAAATCCCTGGTGGAAGCCACAGGGGTTCCAGGCCAGCACATCCTGGTGGCGGTGCTCCCTGG
CTTACCCACCACTGCTGAACTCTTTGTCCTACCCTATCAGGATCCAGCTGGAGAAAACAAAAGGTCAACT
GATGACCTGGAGCAGATATCAGAATTGCTGATCCACACGCTCAACCAAAACTCAGTACACTTCGAGCTGA
AGCCAGGAGTCCGAGTCCTTGTCCATGCTGCTCACTTAACAGCGGCCCCCCTGGTGGACCTCACTCCAAC
CCACAGTGGATCTGCCATGCTGATGCTGCTCTCAGTGGTGTTTGTGGGGCTGGCAGTGTTCGTCATCTAC
AAGTTTAAAAGGAGAGTAGCTTTACCCTCCCCTCCCTCCCCTTCTACTCAACCTGGTGACTCATCTCTCC
GATTGCAAAGAGCAAGACACGCCACTCCGCCTTCAACGCCAAAGCGGGGATCTGCTGGGGCACAGTATGC
AATTTAA

Translation (1168 aa):
MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPL
PLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEP
GTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRS
TDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFH
PKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRM
QNCTEANRNQPFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE
NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFLANKKIDNQVK
TFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASKDTAPSIIVASGNIGSE
LSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPL
FVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKK
RKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYR
KVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG
IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNAT
AVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLR
LSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHILVAVLPGLPTTAELFVLPYQDPAGENKRST
DDLEQISELLIHTLNQNSVHFELKPGVRVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIY
KFKRRVALPSPPSPSTQPGDSSLRLQRARHATPPSTPKRGSAGAQYAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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