NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75172.1 Public Homo sapiens 4 UBE2D3 24 110 108 CCDS HistoryNCBI Gene:7323Re-query CCDS DB by CCDS ID:75172.1Re-query CCDS DB by GeneID:7323See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502404.5 ENSP00000421904.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502404.5Link to Ensembl Protein Viewer:ENSP00000421904.1Re-query CCDS DB by Nucleotide ID:ENST00000502404Re-query CCDS DB by Protein ID:ENSP00000421904
Original member Current member EBI ENST00000507845.5 ENSP00000424359.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507845.5Link to Ensembl Protein Viewer:ENSP00000424359.1Re-query CCDS DB by Nucleotide ID:ENST00000507845Re-query CCDS DB by Protein ID:ENSP00000424359
Original member Current member EBI ENST00000505207.5 ENSP00000426586.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505207.5Link to Ensembl Protein Viewer:ENSP00000426586.1Re-query CCDS DB by Nucleotide ID:ENST00000505207Re-query CCDS DB by Protein ID:ENSP00000426586
Original member Current member EBI ENST00000504211.5 ENSP00000426620.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504211.5Link to Ensembl Protein Viewer:ENSP00000426620.1Re-query CCDS DB by Nucleotide ID:ENST00000504211Re-query CCDS DB by Protein ID:ENSP00000426620
Original member Current member NCBI NM_001300795.2 NP_001287724.1 Accepted alive Link to Nucleotide Sequence:NM_001300795.2Link to Protein Sequence:NP_001287724.1Re-query CCDS DB by Nucleotide ID:NM_001300795Re-query CCDS DB by Protein ID:NP_001287724Link to BLAST:NP_001287724.1

Chromosomal Locations for CCDS 75172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102797415 102797460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102799407 102799500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102801454 102801559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102802561 102802638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102809672 102809703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102809792 102809792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTTTGA
CAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCC
AAATATTAACAGTAATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGTCGCCTGCTTTAACAATT
TCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGA
TTGCACGGATCTATAAAACAGACAGAGATAAGTACAACAGAATATCTCGGGAATGGACTCAGAAGTATGC
CATGTGA

Translation (118 aa):
MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH