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Report for CCDS75138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75138.1 Public Homo sapiens 4 RUFY3 24 110 108 CCDS HistoryNCBI Gene:22902Re-query CCDS DB by CCDS ID:75138.1Re-query CCDS DB by GeneID:22902See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502653.5 ENSP00000425400.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502653.5Link to Ensembl Protein Viewer:ENSP00000425400.1Re-query CCDS DB by Nucleotide ID:ENST00000502653Re-query CCDS DB by Protein ID:ENSP00000425400
Original member Current member NCBI NM_001291993.2 NP_001278922.1 Accepted alive Link to Nucleotide Sequence:NM_001291993.2Link to Protein Sequence:NP_001278922.1Re-query CCDS DB by Nucleotide ID:NM_001291993Re-query CCDS DB by Protein ID:NP_001278922Link to BLAST:NP_001278922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278922.1 567 Q7L099-4 567 100% 0 0

Chromosomal Locations for CCDS 75138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70741662 70741680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70762519 70762692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70763552 70763669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70764475 70764576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70768538 70768661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70773511 70773572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70775168 70775233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70778369 70778438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70783091 70783183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70784796 70784879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70788806 70788973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70789495 70789592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70793785 70793904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70794795 70794894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70800141 70800205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70802956 70802983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70804348 70804416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70806516 70806659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGCGCGATGATACAGAAGATCCTAATTATCTCATGGCTAATGAACGCATGAACCTCATGAACATGGCCA
AG
CTGAGTATCAAGGGCTTGATTGAATCAGCTCTGAACCTGGGGAGGACTCTTGACTCTGACTATGCACC
T
CTCCAGCAATTCTTTGTGGTGATGGAGCACTGTCTGAAACATGGCTTGAAAGCTAAAAAAACTTTTCTC
GGA
CAAAATAAATCCTTCTGGGGGCCTCTAGAACTGGTAGAAAAGCTTGTTCCAGAAGCCGCAGAGATAA
CA
GCAAGTGTTAAAGATCTTCCAGGACTTAAGACACCAGTAGGTAGAGGAAGAGCCTGGCTTCGTTTGGC
A
TTAATGCAAAAGAAACTTTCAGAATATATGAAAGCTTTGATCAATAAGAAAGAACTTCTCAGTGAATTC
TAC
GAACCCAATGCCCTCATGATGGAAGAAGAAGGAGCCATAATTGCTGGTCTGTTGGTGGGTCTGAATG
TC
ATTGATGCCAATTTCTGTATGAAAGGAGAAGACTTGGACTCTCAGGTTGGAGTTATAGATTTTTCAAT
G
TATCTCAAGGACGGGAACAGCAGTAAAGGTACTGAAGGAGACGGTCAGATTACTGCAATTCTGGACCAG
AAG
AACTATGTAGAAGAACTGAACAGACATTTGAATGCTACTGTAAACAACCTTCAGGCAAAAGTAGATG
CA
TTAGAAAAATCCAACACTAAACTGACAGAGGAGCTTGCAGTTGCAAACAACAGGATCATTACCTTACA
A
GAAGAAATGGAACGAGTTAAAGAGGAAAGTTCCTACATACTGGAATCCAATCGGAAGGGTCCCAAGCAA
GAC
AGAACTGCAGAAGGGCAAGCACTAAGTGAAGCAAGAAAGCATTTAAAAGAAGAGACACAATTACGAT
TG
GATGTTGAGAAAGAACTGGAGATGCAGATCAGCATGAGGCAGGAGATGGAATTGGCTATGAAGATGCT
G
GAGAAGGATGTCTGTGAGAAGCAGGATGCCCTGGTATCTCTTCGGCAGCAGCTGGATGACCTCAGAGCT
CTC
AAGCATGAACTTGCCTTTAAGCTGCAGAGTTCAGACTTAGGAGTAAAACAGAAAAGTGAACTAAACA
GT
CGCTTGGAAGAGAAGACTAATCAGATGGCTGCTACCATTAAACAACTTGAACAAAGATTGCGCCAGGC
T
GAGCGAAGCCGCCAATCTGCTGAGTTGGACAACCGGCTCTTCAAACAGGACTTTGGAGACAAGATCAAC
AGT
CTGCAGCTGGAAGTCGAGGAGCTCACCAGGCAGCGGAACCAGCTTGAGTTAGAACTAAAACAGGAAA
AA
GAAAGAAGATTACAAAACGACAGGAGCATCCCAGGAAGGGGTTCCCAGAAGTCAGAATCCAAGATGGA
T
GGGAAGCACAAAATGCAAGAGGAAAATGTTAAACTAAAAAAGCCCCTGGAAGAAAGCCACAGGCTGCAA
CCC
CACCCTATGGATGAACAGGATCAGCTGCTGCTCTCTGAAAAGCCACAGTTGTGTCAGCTATGCCAGG
AA
GACGGCAGCCTAACAAAGAATGTGTGTAAGAACTGCAGCGGAACCTTCTGTGATGCCTGTTCAACAAA
T
GAACTGCCTCTTCCTTCAAGTATCAAGCTTGAGCGAGTTTGCAATCCCTGTCACAAGCATCTGATGAAG
CAA
TATTCTACCAGCCCATCATAA


Translation (567 aa):
MRDDTEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFL
G
QNKSFWGPLELVEKLVPEAAEITASVKDLPGL
KTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEF
Y
EPNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQ
VGVIDFSMYLKDGNSSKGTEGDGQITAILDQ
K
NYVEELNRHL
NATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQ
D
RTAEGQALSEARKHLKEETQLRL
DVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRA
L
KHELAFKLQ
SSDLGVKQKSELNSRLEEKTNQMAATIKQLEQRLRQAERSRQSAELDNRLFKQDFGDKIN
S
LQLEVEELTRQ
RNQLELELKQEKERRLQNDRSIPGRGSQKSESKMDGKHKMQEENVKLKKPLEESHRLQ
P
HPMDEQ
DQLLLSEKPQLCQLCQEDGSLTKNVCKNCSGTFCDACSTNELPLPSSIKLERVCNPCHKHLMK
Q
YSTSPS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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