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Report for CCDS74905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74905.1 Public Homo sapiens 3 NR2C2 24 110 108 CCDS HistoryNCBI Gene:7182Re-query CCDS DB by CCDS ID:74905.1Re-query CCDS DB by GeneID:7182See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393102.7 ENSP00000376814.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393102.7Link to Ensembl Protein Viewer:ENSP00000376814.3Re-query CCDS DB by Nucleotide ID:ENST00000393102Re-query CCDS DB by Protein ID:ENSP00000376814
Original member Current member EBI ENST00000406272.6 ENSP00000384463.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406272.6Link to Ensembl Protein Viewer:ENSP00000384463.2Re-query CCDS DB by Nucleotide ID:ENST00000406272Re-query CCDS DB by Protein ID:ENSP00000384463
Original member Current member EBI ENST00000425241.6 ENSP00000388387.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425241.6Link to Ensembl Protein Viewer:ENSP00000388387.1Re-query CCDS DB by Nucleotide ID:ENST00000425241Re-query CCDS DB by Protein ID:ENSP00000388387
Original member Current member NCBI NM_001291694.2 NP_001278623.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001291694.2Link to Protein Sequence:NP_001278623.1Re-query CCDS DB by Nucleotide ID:NM_001291694Re-query CCDS DB by Protein ID:NP_001278623Link to BLAST:NP_001278623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278623.1 596 P49116-1 596 100% 0 0

Chromosomal Locations for CCDS 74905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15003915 15003986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15013589 15013789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15016152 15016254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15020753 15020932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15023200 15023347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15024115 15024208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15028586 15028719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15030275 15030452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15032379 15032500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15034670 15034809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15038000 15038137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15039122 15039227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15042834 15043008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGACCAGCCCCTCCCCACGCATCCAGATAATCTCCACCGACTCTGCTGTAGCCTCACCTCAGCGCATTC
AGATTGTCACAGACCAGCAGACAGGACAGAAAATCCAGATAGTCACCGCAGTGGACGCCTCCGGATCCCC
CAAACAGCAGTTCATCCTGACCAGCCCAGATGGAGCTGGAACTGGGAAGGTGATCCTGGCTTCCCCAGAG
ACATCCAGCGCCAAGCAACTCATATTCACCACCTCAGACAACCTCGTCCCTGGCAGGATCCAGATTGTCA
CGGATTCTGCCTCTGTGGAGCGTTTACTGGGGAAGACGGACGTCCAGCGGCCCCAGGTGGTAGAGTACTG
TGTGGTCTGTGGCGACAAAGCCTCCGGCCGTCACTATGGGGCTGTCAGTTGTGAAGGTTGCAAAGGTTTC
TTCAAAAGGAGTGTGAGGAAAAATTTGACCTACAGCTGCCGGAGCAACCAAGACTGCATCATCAATAAAC
ATCACCGGAACCGCTGTCAGTTTTGCCGGCTGAAAAAATGCTTAGAGATGGGCATGAAAATGGAATCTGT
GCAGAGTGAACGGAAGCCCTTCGATGTGCAACGGGAGAAACCAAGCAATTGTGCTGCTTCAACTGAGAAA
ATCTATATCCGGAAAGACCTGAGAAGTCCCCTGATAGCTACTCCCACGTTTGTGGCAGACAAAGATGGAG
CAAGACAAACAGGTCTTCTTGATCCAGGGATGCTTGTGAACATCCAGCAGCCTTTGATACGTGAGGATGG
TACAGTTCTCCTGGCCACGGATTCTAAGGCTGAAACAAGCCAGGGAGCTCTGGGCACACTGGCAAATGTA
GTGACCTCCCTTGCCAACCTAAGTGAATCTTTGAACAACGGTGACACTTCAGAAATCCAGCCAGAGGACC
AGTCTGCAAGTGAGATAACTCGGGCATTTGATACCTTAGCTAAAGCACTTAATACCACAGACAGCTCCTC
TTCTCCAAGCTTGGCAGATGGGATAGACACCAGTGGAGGAGGGAGCATCCACGTCATCAGCAGAGACCAG
TCGACACCCATCATTGAGGTTGAAGGCCCCCTCCTTTCAGACACACACGTCACATTTAAGCTAACAATGC
CCAGTCCAATGCCAGAGTACCTCAACGTGCACTACATCTGTGAGTCTGCATCCCGTCTGCTTTTCCTCTC
AATGCACTGGGCTCGGTCAATCCCAGCCTTTCAGGCACTTGGGCAGGACTGCAACACCAGCCTTGTGCGG
GCCTGCTGGAATGAGCTCTTCACCCTCGGCCTGGCCCAGTGTGCCCAGGTCATGAGTCTCTCCACCATCC
TGGCTGCCATTGTCAACCACCTGCAGAACAGCATCCAGGAAGATAAACTTTCTGGTGACCGGATAAAGCA
AGTCATGGAGCACATCTGGAAGCTGCAGGAGTTCTGTAACAGCATGGCGAAGCTGGATATAGATGGCTAT
GAGTATGCATACCTTAAAGCTATAGTTCTCTTTAGCCCCGATCATCCAGGTTTGACCAGCACAAGCCAGA
TTGAAAAATTCCAAGAAAAGGCACAGATGGAGTTGCAGGACTATGTTCAGAAAACCTACTCAGAAGACAC
CTACCGATTGGCCCGGATCCTCGTTCGCCTGCCGGCACTCAGGCTGATGAGCTCCAACATAACAGAAGAA
CTTTTTTTTACTGGTCTCATTGGCAATGTTTCGATAGACAGCATAATCCCCTACATCCTCAAGATGGAGA
CAGCAGAGTATAATGGCCAGATCACCGGAGCCAGTCTATAG

Translation (596 aa):
MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPE
TSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGF
FKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEK
IYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANV
VTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQ
STPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVR
ACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGY
EYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEE
LFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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