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Report for CCDS73553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73553.1 Public Homo sapiens 13 SPATA13 24 110 108 CCDS HistoryNCBI Gene:221178Re-query CCDS DB by CCDS ID:73553.1Re-query CCDS DB by GeneID:221178See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409126.5 ENSP00000386471.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409126.5Link to Ensembl Protein Viewer:ENSP00000386471.1Re-query CCDS DB by Nucleotide ID:ENST00000409126Re-query CCDS DB by Protein ID:ENSP00000386471
Original member Current member NCBI NM_001286793.2 NP_001273722.1 Accepted alive Link to Nucleotide Sequence:NM_001286793.2Link to Protein Sequence:NP_001273722.1Re-query CCDS DB by Nucleotide ID:NM_001286793Re-query CCDS DB by Protein ID:NP_001273722Link to BLAST:NP_001273722.1

Chromosomal Locations for CCDS 73553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24270858 24270912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24284135 24284271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286214 24286393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24288999 24289178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24290652 24290884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24294739 24294868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24297363 24297735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24300401 24300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24302598 24302773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGTAGCTAGAGGGGAGATAGCAAGATTCTGGAGTCTGGAAAGCCTTCACTTGGTTTCTTCAGATGGAG
GTACTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGACCTCTGCCA
GGCCAGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGTGATGGCAAC
GTGGTCTGCGCAGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCCGGGG
ATGTCATCCAGGTTCTGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAAGGAAGCCTG
GTTCCCCGCGAGCTTCGTCAGAGGCTATATCCGACAGTGCCGCAAGCACACAGGAATGTTCACCGTTGCG
CAGCTAGCCACTATTTTTGGAAACATTGAAGATATTTACAAATTCCAAAGAAAGTTTCTGAAAGACCTTG
AGAAACAGTACAACAAAGAGGAACCTCACTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATCAAGAGGG
CTTTGCCATCTATTCCGAGTACTGCAACAACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATGAAG
CAGGGCAAGTACAGACATTTCTTTGAAGCCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACG
GGTTCCTGCTCACACCAGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATAC
CACACAGGAACACGGTGATTACAGCAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTG
ATCAACGAGCGCAAGCGCAAGCTGGAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCT
GGGAGGGACTGGATATCTTAGACCGAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAA
GCAAGGCAAAAGCCAGCAGCGGACGTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTG
CTGCGCAGGGACATGCTGTACTACAAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGG
ATGGGCGCGACAAGGACTGCAACCTCAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGA
GGTTTATTTGTTTTGTGCCAAAAAACAAGAAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGG
AGGCGGGTGCAAGAGGACAAGGAGATGGGAATGGAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAA
ATGCTCAAAAGGCAGGACATGGAAAGTCAAAAGGCTACAACAGGTGCCCTGTGGCCCCACCGCACCAGGG
CCTGCACCCCATCCACCAGCGCCACATCACTATGCCCACAAGCGTCCCCCAGCAGCAGGTCTTTGGCCTG
GCGGAACCCAAGAGGAAGTCCTCGCTCTTCTGGCACACCTTCAACAGGCTCACCCCCTTCCGGAAATGA

Translation (512 aa):
MVARGEIARFWSLESLHLVSSDGGTEPSALVDDNGSEEDFSYEDLCQASPRYLQPGGEQLAINELISDGN
VVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSEDKEAWFPASFVRGYIRQCRKHTGMFTVA
QLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQNQEGFAIYSEYCNNHPGACLELANLMK
QGKYRHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYSNIKAAYEAMKNVACL
INERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITKQGKSQQRTFFLFDHQLVSCKKDL
LRRDMLYYKGRLDMDEMELVDLGDGRDKDCNLSVKNAFKLVSRTTDEVYLFCAKKQEDKARWLQACADER
RRVQEDKEMGMEISENQKKLAMLNAQKAGHGKSKGYNRCPVAPPHQGLHPIHQRHITMPTSVPQQQVFGL
AEPKRKSSLFWHTFNRLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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