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Report for CCDS73520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73520.1 Public Homo sapiens 12 SVOP 24 110 108 CCDS HistoryNCBI Gene:55530Re-query CCDS DB by CCDS ID:73520.1Re-query CCDS DB by GeneID:55530See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610966.5 ENSP00000479104.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610966.5Link to Ensembl Protein Viewer:ENSP00000479104.1Re-query CCDS DB by Nucleotide ID:ENST00000610966Re-query CCDS DB by Protein ID:ENSP00000479104
Original member Current member NCBI NM_018711.5 NP_061181.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018711.5Link to Protein Sequence:NP_061181.1Re-query CCDS DB by Nucleotide ID:NM_018711Re-query CCDS DB by Protein ID:NP_061181Link to BLAST:NP_061181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061181.1 548 Q8N4V2 548 100% 0 0

Chromosomal Locations for CCDS 73520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108912535 108912741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108915783 108915872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108918043 108918124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108919675 108919786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108922690 108922797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108934195 108934271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108937264 108937337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108938827 108938955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108940784 108940909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108945103 108945166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108960923 108961047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108972405 108972476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108977398 108977496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108978578 108978663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108983601 108983761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109020834 109020868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGAGGAGGACTTATTCCAGCTAAGGCAGCTGCCGGTTGTGAAATTCCGTCGCACAGGCGAGAGTGCAA
GGTCAGAGGACGACACGGCTTCAGGAGAGCATGAAGTCCAGATTGAAGGGGTCCACGTGGGCCTAGAGGC
TGTGGAGCTGGATGATGGGGCAGCTGTGCCCAAGGAGTTTGCCAATCCCACTGATGATACTTTCATGGTG
GAAGATGCAGTGGAAGCCATTGGCTTTGGAAAATTTCAGTGGAAGCTGTCTGTTCTCACTGGCTTGGCTT
GGATGGCTGATGCCATGGAGATGATGATCCTCAGCATCCTGGCACCACAGCTGCATTGCGAGTGGAGGCT
CCCAAGCTGGCAGGTGGCATTGCTGACCTCGGTGGTCTTTGTAGGCATGATGTCCAGCTCCACGCTCTGG
GGAAATATCTCAGACCAGTACGGCAGGAAAACAGGGCTGAAGATCAGCGTGCTGTGGACTCTGTACTATG
GCATCCTTAGTGCATTTGCGCCCGTGTATAGCTGGATCCTGGTGCTCCGGGGCCTGGTGGGCTTCGGGAT
CGGAGGAGTTCCCCAGTCGGTGACGCTGTATGCCGAGTTCCTTCCCATGAAAGCCAGAGCTAAATGTATT
TTGCTGATTGAGGTATTCTGGGCCATCGGGACAGTGTTCGAGGTCGTCCTGGCTGTGTTCGTGATGCCCA
GCCTGGGCTGGCGTTGGCTGCTCATCCTCTCAGCTGTCCCGCTCCTCCTCTTTGCCGTGCTGTGTTTCTG
GCTGCCTGAAAGTGCAAGGTATGATGTGCTGTCAGGGAACCAGGAAAAGGCAATCGCCACCTTAAAGAGG
ATAGCAACTGAAAACGGAGCTCCCATGCCGCTGGGGAAACTCATCATCTCCAGACAGGAAGACCGAGGCA
AAATGAGGGACCTTTTCACACCCCATTTTAGATGGACAACTTTGCTGCTGTGGTTTATATGGTTTTCCAA
TGCATTCTCTTACTACGGGTTAGTTCTACTCACCACAGAACTCTTCCAGGCAGGAGATGTCTGCGGCATC
TCCAGTCGGAAGAAGGCTGTAGAGGCAAAATGCAGCCTGGCCTGCGAGTACCTGAGTGAGGAGGATTACA
TGGACTTGCTGTGGACCACCCTCTCTGAGTTTCCAGGTGTCCTTGTGACTCTGTGGATTATTGACCGCCT
GGGGCGCAAGAAGACCATGGCCCTGTGCTTTGTCATCTTCTCCTTCTGCAGCCTCCTGCTGTTTATCTGT
GTTGGAAGAAATGTGCTCACTCTGTTACTCTTCATTGCAAGAGCGTTTATTTCTGGAGGCTTTCAAGCGG
CATATGTTTACACACCTGAGGTCTACCCCACGGCAACGCGGGCCCTCGGCCTGGGCACCTGCAGCGGCAT
GGCAAGAGTGGGTGCTCTCATCACTCCGTTCATCGCCCAGGTGATGCTGGAATCCTCTGTGTACCTGACT
CTGGCAGTTTACAGTGGCTGCTGCCTCCTGGCTGCCCTGGCCTCCTGCTTTTTGCCCATTGAGACCAAAG
GCCGAGGACTGCAGGAGTCCAGCCACCGGGAGTGGGGCCAGGAGATGGTCGGCCGAGGAATGCACGGTGC
AGGTGTTACCAGGTCGAACTCTGGCTCTCAGGAATAG

Translation (548 aa):
MEEDLFQLRQLPVVKFRRTGESARSEDDTASGEHEVQIEGVHVGLEAVELDDGAAVPKEFANPTDDTFMV
EDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLW
GNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCI
LLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKR
IATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGI
SSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFIC
VGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT
LAVYSGCCLLAALASCFLPIETKGRGLQESSHREWGQEMVGRGMHGAGVTRSNSGSQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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