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Report for CCDS7231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7231.1 Public Homo sapiens 10 SLC18A3 24 110 108 CCDS HistoryNCBI Gene:6572Re-query CCDS DB by CCDS ID:7231.1Re-query CCDS DB by GeneID:6572See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374115.5 ENSP00000363229.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374115.5Link to Ensembl Protein Viewer:ENSP00000363229.3Re-query CCDS DB by Nucleotide ID:ENST00000374115Re-query CCDS DB by Protein ID:ENSP00000363229
Original member Current member NCBI NM_003055.3 NP_003046.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003055.3Link to Protein Sequence:NP_003046.2Re-query CCDS DB by Nucleotide ID:NM_003055Re-query CCDS DB by Protein ID:NP_003046Link to BLAST:NP_003046.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003046.2 532 Q16572 532 100% 0 0

Chromosomal Locations for CCDS 7231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49610741 49612339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGAATCCGCGGAACCTGCGGGCCAGGCCCGGGCGGCGGCCACCAAGCTGTCGGAGGCTGTGGGCGCGG
CGCTGCAGGAGCCCCGGCGGCAGAGGCGCCTGGTGCTTGTTATCGTGTGCGTGGCGCTGTTACTGGACAA
CATGCTGTACATGGTCATCGTGCCCATAGTGCCCGACTACATCGCCCACATGCGCGGGGGCGGCGAGGGC
CCCACCCGGACTCCCGAGGTGTGGGAGCCCACCCTGCCGCTGCCCACTCCGGCCAATGCCAGCGCCTACA
CGGCCAACACCTCGGCGTCCCCGACAGCTGCGTGGCCAGCGGGCTCAGCCCTTCGGCCCCGCTACCCTAC
GGAGAGCGAAGACGTGAAGATCGGGGTGCTGTTTGCTTCCAAGGCTATCCTGCAGCTGCTAGTGAACCCC
TTGAGCGGGCCCTTCATCGACCGCATGAGCTACGACGTGCCGCTGCTGATCGGCCTGGGCGTCATGTTCG
CCTCTACAGTCCTGTTCGCCTTCGCCGAGGACTACGCCACGCTGTTCGCGGCGCGCAGCCTGCAGGGCCT
GGGCTCAGCCTTCGCCGACACGTCTGGCATAGCCATGATCGCCGATAAGTACCCGGAGGAGCCGGAGCGC
AGTCGTGCACTGGGCGTGGCGCTGGCCTTCATTAGCTTCGGAAGCCTAGTGGCCCCGCCCTTCGGGGGCA
TCCTCTATGAGTTCGCCGGCAAGCGCGTGCCCTTCTTGGTGCTAGCTGCCGTGTCGCTCTTTGACGCGCT
GTTGCTGCTGGCAGTGGCCAAACCCTTCTCGGCGGCTGCACGGGCTCGGGCCAACCTGCCAGTGGGCACT
CCCATCCACCGCCTCATGCTAGACCCCTACATTGCCGTGGTGGCCGGCGCGCTCACCACCTGTAACATTC
CCCTCGCCTTCCTCGAACCCACCATTGCCACGTGGATGAAGCATACGATGGCGGCTTCCGAGTGGGAGAT
GGGCATGGCCTGGCTGCCGGCCTTCGTGCCTCATGTGCTGGGCGTCTACCTCACCGTGCGCCTGGCGGCG
CGCTACCCACACCTGCAGTGGCTGTACGGCGCGCTTGGGCTGGCTGTGATCGGCGCCAGCTCGTGCATCG
TGCCCGCCTGCCGCTCCTTCGCGCCGCTAGTGGTCTCACTATGCGGCCTCTGTTTTGGCATAGCCCTAGT
CGACACAGCACTGCTGCCCACGCTCGCCTTCCTGGTGGACGTGCGCCATGTCTCAGTCTATGGCAGCGTC
TACGCCATCGCCGACATCTCCTATTCGGTGGCCTACGCGCTCGGGCCCATAGTGGCAGGCCACATTGTGC
ACTCGCTGGGCTTTGAGCAGCTCAGCCTTGGCATGGGACTGGCCAACCTGCTCTATGCTCCCGTCTTGCT
GCTGCTCCGCAACGTGGGCCTCCTGACGCGCTCCCGTTCCGAGCGCGATGTGCTGCTTGATGAGCCACCG
CAAGGTCTGTACGATGCGGTGCGCCTGCGTGAGCGTCCTGTGTCTGGCCAGGACGGCGAGCCTCGCAGCC
CGCCTGGCCCTTTTGATGCGTGCGAGGACGACTACAACTACTACTACACCCGCAGCTAG

Translation (532 aa):
MESAEPAGQARAAATKLSEAVGAALQEPRRQRRLVLVIVCVALLLDNMLYMVIVPIVPDYIAHMRGGGEG
PTRTPEVWEPTLPLPTPANASAYTANTSASPTAAWPAGSALRPRYPTESEDVKIGVLFASKAILQLLVNP
LSGPFIDRMSYDVPLLIGLGVMFASTVLFAFAEDYATLFAARSLQGLGSAFADTSGIAMIADKYPEEPER
SRALGVALAFISFGSLVAPPFGGILYEFAGKRVPFLVLAAVSLFDALLLLAVAKPFSAAARARANLPVGT
PIHRLMLDPYIAVVAGALTTCNIPLAFLEPTIATWMKHTMAASEWEMGMAWLPAFVPHVLGVYLTVRLAA
RYPHLQWLYGALGLAVIGASSCIVPACRSFAPLVVSLCGLCFGIALVDTALLPTLAFLVDVRHVSVYGSV
YAIADISYSVAYALGPIVAGHIVHSLGFEQLSLGMGLANLLYAPVLLLLRNVGLLTRSRSERDVLLDEPP
QGLYDAVRLRERPVSGQDGEPRSPPGPFDACEDDYNYYYTRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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