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Report for CCDS71341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71341.1 Public Mus musculus 4 Asph 23 108 98 CCDS HistoryNCBI Gene:65973Re-query CCDS DB by CCDS ID:71341.1Re-query CCDS DB by GeneID:65973See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108339.7 ENSMUSP00000103976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108339.7Link to Ensembl Protein Viewer:ENSMUSP00000103976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108339Re-query CCDS DB by Protein ID:ENSMUSP00000103976
Original member Current member NCBI NM_001290367.1 NP_001277296.1 Accepted alive Link to Nucleotide Sequence:NM_001290367.1Link to Protein Sequence:NP_001277296.1Re-query CCDS DB by Nucleotide ID:NM_001290367Re-query CCDS DB by Protein ID:NP_001277296Link to BLAST:NP_001277296.1

Chromosomal Locations for CCDS 71341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9453295 9453445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9474898 9475031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9475390 9475481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9484472 9484607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9508627 9508764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9514589 9514678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9517636 9517734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9529886 9530022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9531915 9532065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9537679 9537765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9542225 9542310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9583812 9583856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9594663 9594698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9595377 9595415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9598269 9598301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9601307 9601363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9602469 9602501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9604516 9604629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9607797 9607871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9610843 9610938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9635901 9635969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9639198 9639276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGTCATTGCATTGCTCGGCGTCTGGACATCTGTGGCTGTCGTGTGGTTTGACTTGGTCGATTATGAAG
AAGTTCTAGGAAAACTAGGAGTCTATGATGCGGATGGCGATGGAGACTTTGATGTGGATGATGCCAAAGT
TTTATTAGGCCTTAAAGAAAGATCTCCTTCTGAGAGGACATTTCCACCGGAGGAGGAGGCAGAGACTCAC
GCTGAGCTGGAGGAGCAGGCCCCTGAGGGGGCAGACATCCAGAATGTTGAAGATGAAGTAAAGGAACAAA
TTCAGTCCCTTCTTCAGGAATCAGTACACACAGACCATGACCTTGAAGCAGATGGGCTGGCAGGAGAACC
ACAGCCGGAGGTTGAGGACTTCCTCACAGTGACCGACAGTGATGACAGATTTGAGGACCTGGAACCCGGG
ACAGTTCATGAAGAAATCGAGGATACTTACCATGTGGAAGACACAGCATCGCAGAACCATCCAAATGACA
TGGAAGAGATGACGAATGAGCAGGAAAATTCAGAGGAAGTAAGACACCAAGACTATGATGAACCAGTATA
TGAACCCTCAGAGCATGAAGGGGTCGCGATTTCAGATAACACCATAGATGATTCCAGCATAATCTCAGAA
GAAATAAATGTCGCCTCTGTTGAAGAACAGCAAGACACACCACCAGTTAAGAAGAAGAAGCCTAAACTTC
TGAACAAATTTGATAAGACAATTAAGGCTGAGCTGGATGCTGCAGAAAAGCTCCGGAAAAGGGGTAAAAT
TGAGGAAGCAGTGAACGCATTTGAAGAACTGGTTCGAAAGTACCCTCAGAGCCCACGAGCAAGATATGGC
AAAGCGCAGTGTGAAGATGACTTGGCAGAGAAGCAGAGAAGCAATGAGGTTCTGCGCAGGGCCATCGAGA
CCTACCAGGAGGCAGCCGACCTGCCTGATGCCCCTACAGACCTGGTGAAGCTGAGCTTGAAGCGAAGGTC
GGAACGGCAGCAGTTTCTAGGTCACATGAGAGGTTCTCTACTTACCCTCCAGAGACTAGTTCAACTGTTC
CCTAGTGATACTACCTTAAAAAACGACCTTGGCGTAGGATACCTCTTGTTGGGAGACAACGACAGTGCCA
AGAAGGTTTACGAAGAGGTGCTAAATGTGACACCAAATGATGGCTTCGCTAAAGTGCATTACGGCTTCAT
CCTGAAGGCACAGAACAAGATATCTGAGAGCATTCCCTACTTAAAGGAAGGAATCGAATCTGGGGACCCT
GGCACGGATGATGGCCGGTTTTACTTCCACTTGGGGGATGCCATGCAGAGGGTCGGGAACAAAGAGGCAT
ATAAGTGGTATGAACTTGGGCACAAGAGAGGACATTTTGCCTCTGTCTGGCAGCGTTCCCTCTACAATGT
GAATGGTCTGAAGGCTCAGCCGTGGTGGACACCCAGGGAGACTGGCTACACAGAGCTAGTGAAGTCTTTA
GAGAGAAACTGGAAGTTAATCCGTGATGAAGGCCTCATGGTGATGGATAAAGCCAAGGGTCTCTTCCTGC
CTGAGGACGAAAACCTTCGGGAGAAGGGCGACTGGAGCCAGTTCACACTGTGGCAGCAAGGAAGGAAGAA
TGAGAATGCCTGTAAAGGAGCGCCTAAGACCTGTGCTTTACTAGAAAAGTTTTCCGAAACAACAGGATGC
AGAAGAGGACAGATCAAATACTCCATCATGCACCCTGGAACTCATGTGTGGCCGCATACAGGACCCACAA
ACTGCAGGCTCCGAATGCATCTGGGGTTAGTGATCCCCAAGGAAGGCTGCAAGATCCGGTGTGCCAATGA
GACCAGGACGTGGGAAGAAGGCAAGGTGCTCATCTTTGATGACTCTTTTGAGCACGAGGTTTGGCAGGAT
GCCTCGTCTTTCCGGCTGATATTCATCGTGGATGTGTGGCACCCCGAGCTGACCCCTCAGCAGAGACGCA
GCCTTCCCGCAATTTGA

Translation (658 aa):
MVIALLGVWTSVAVVWFDLVDYEEVLGKLGVYDADGDGDFDVDDAKVLLGLKERSPSERTFPPEEEAETH
AELEEQAPEGADIQNVEDEVKEQIQSLLQESVHTDHDLEADGLAGEPQPEVEDFLTVTDSDDRFEDLEPG
TVHEEIEDTYHVEDTASQNHPNDMEEMTNEQENSEEVRHQDYDEPVYEPSEHEGVAISDNTIDDSSIISE
EINVASVEEQQDTPPVKKKKPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFEELVRKYPQSPRARYG
KAQCEDDLAEKQRSNEVLRRAIETYQEAADLPDAPTDLVKLSLKRRSERQQFLGHMRGSLLTLQRLVQLF
PSDTTLKNDLGVGYLLLGDNDSAKKVYEEVLNVTPNDGFAKVHYGFILKAQNKISESIPYLKEGIESGDP
GTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPRETGYTELVKSL
ERNWKLIRDEGLMVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRKNENACKGAPKTCALLEKFSETTGC
RRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETRTWEEGKVLIFDDSFEHEVWQD
ASSFRLIFIVDVWHPELTPQQRRSLPAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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