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Report for CCDS71174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71174.1 Public Mus musculus 2 Nnat 23 108 98 CCDS HistoryNCBI Gene:18111Re-query CCDS DB by CCDS ID:71174.1Re-query CCDS DB by GeneID:18111See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088484.5 ENSMUSP00000085836.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088484.5Link to Ensembl Protein Viewer:ENSMUSP00000085836.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088484Re-query CCDS DB by Protein ID:ENSMUSP00000085836
Original member Current member NCBI NM_001291128.1 NP_001278057.1 Accepted alive Link to Nucleotide Sequence:NM_001291128.1Link to Protein Sequence:NP_001278057.1Re-query CCDS DB by Nucleotide ID:NM_001291128Re-query CCDS DB by Protein ID:NP_001278057Link to BLAST:NP_001278057.1

Chromosomal Locations for CCDS 71174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157560189 157560260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157560448 157560535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157561542 157561771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGCCGCAGTGGCAGCAGCCTCGGCAGAACTGCTCATCATCGGCTGGTACATCTTCCGCGTGCTGCTGC
AGACCCTGTCCCCAGTGCGCCCGCGCCCAGCCGGGAACAAAGACTCAGGGGTGCGGCGGTCGCCCGCTGC
GGACGATCGCGACCAACGCGGTGTTCAGGTACTCCCTGCAGAAGCTGGCGCACACGGTGTCCCGGACCGG
GCGGCAGGTGCTGGGGGAGCGCAGGCAGCGAGCCCCCAACTGAGGCCCCAGCTCCCAGCCCTGGGCGGCC
GTGTCATCAGGTGCTCCTGTGCTTCTCGACCAGCATGGGAGCCAGTGCCGCGCAGGAATGGGGGGTCCCC
TGTGTTCCCTCGTCAGAGGAGCACTTGCCAAGGTCAGTGA

Translation (129 aa):
MAAVAAASAELLIIGWYIFRVLLQTLSPVRPRPAGNKDSGVRRSPAADDRDQRGVQVLPAEAGAHGVPDR
AAGAGGAQAASPQLRPQLPALGGRVIRCSCASRPAWEPVPRRNGGSPVFPRQRSTCQGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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