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Report for CCDS70700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70700.1 Public Mus musculus 16 Vps8 23 108 98 CCDS HistoryNCBI Gene:209018Re-query CCDS DB by CCDS ID:70700.1Re-query CCDS DB by GeneID:209018See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118923.7 ENSMUSP00000112636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118923.7Link to Ensembl Protein Viewer:ENSMUSP00000112636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118923Re-query CCDS DB by Protein ID:ENSMUSP00000112636
Original member Current member NCBI NM_001285894.1 NP_001272823.1 Accepted alive Link to Nucleotide Sequence:NM_001285894.1Link to Protein Sequence:NP_001272823.1Re-query CCDS DB by Nucleotide ID:NM_001285894Re-query CCDS DB by Protein ID:NP_001272823Link to BLAST:NP_001272823.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272823.1 1399 Q0P5W1-3 1399 100% 0 0

Chromosomal Locations for CCDS 70700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21434911 21435063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21435753 21435821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21442334 21442464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21444089 21444182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21447255 21447287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21448349 21448403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21451356 21451361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21456229 21456353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21457379 21457465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21459741 21459808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21461122 21461275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21461378 21461437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21463595 21463702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21466414 21466494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21470117 21470287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21475248 21475322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21476474 21476509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21477486 21477576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21477845 21477891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21478394 21478483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21495880 21495926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21500188 21500410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21504398 21504487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21506770 21506821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21511519 21511561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21517283 21517355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21518113 21518232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21521884 21521955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21526377 21526496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21527536 21527592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21531280 21531362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21532283 21532367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21533063 21533161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21543268 21543314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21554075 21554222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21559334 21559423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21560198 21560240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21563130 21563233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21567969 21568053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21568389 21568471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21574967 21575047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21576625 21576794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21581533 21581698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21608168 21608221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21640679 21640759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21644121 21644270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4200 nt):
ATGGAAACTGAACCAGACCAGGAGCATTTGGACCAGAACCCGTGCGCCAGGACTGTGGAAGAAGAGTTGA
GCAAGTCTTTTAATTTAGAAGCTTCCCTTTCAAAATTCTCTTGCCTAGATCTGGATAAGGAGCTGGAGTT
CAGAAGTGACCTGATCGATGACAAGGAGTTTGATATTCCTCAGGTGGATACCCCTCCAACTCTGGAAAGC
ATTCTTAATGAGACGGACGATGAAGATGAGTCTTTCGTTCTGGAGGACCCTACCTTGTTAAACGTTGACA
CCATCGACTCTCACTCTTACGATACCTCATCTGTGGCGAGCTCAGACAGCGGCGACAGGGCCAACCTAAA
GAGGAAGAAGAAGTTGCCGGACTCTTTCTCGCTGCATGGGTCGGTTATGCGACATTCACTTCTAAAGGGG
ATATCTGCACAGATCGTGTCCGCAGCCGACAAAGTAGATGCTGGCTTGCCTACAGCAATTGCCGTGTCCA
GTCTGATAGCGGTGGGAACGTCTCACGGACTGGCTTTAATATTTGGAAAAGATCAGAATCAAGCACTGCG
GCTCTGCCTGGGTAGCACCAGTGTTGGAGGGCAGTATGGAGCCATCTCTGCCCTCAGCATCAACAATGAC
TGCTCAAGACTTCTTTGTGGCTTTGCTAAAGGGCAGATCACCATGTGGGATTTGGCCAGTGGAAAACTTC
TCAGATCAATAACAGATGCTCATCCTCCAGGGACCGCAATCTTGCACATCAAGTTCACAGATGATCCAAC
TCTTGCGATTTGCAACGACAGTGGAGGCTCTGTTTTTGAACTAACATTTAAGAGAGTGATGGGCGTGCGA
ACGTGTGAGTCTCGGTGCCTATTCAGCGGCTCCAAGGGTGAGGTCTGCTGCATCGAGCCGCTGCACTCAA
AGCCCGAGCTGAAAGACCATCCCATCACGCAGTTCTCACTGCTGGCCATGGCGTCCTTAACAAAGATATT
GGTCATTGGGTTGAAACCATCCCTGAAAGTGTGGATGACTTTCCCCTATGGACGGATGGATCCTTCCAGT
GTTCCGCTGCTGGCCTGGCACTTCGTGGCAGTGAATAACTCTGTGAATCCCATGCTCGCCTTCTGCAGAG
GCGACATGGTTCACTTTCTCCTGGTTAAGAGAGATGAGTCGGGCGCAATACACGTCACCAAGCAAAAGCA
CCTTCACCTGTACTATGACCTGATCAACTTCACTTGGATCAACTCGCGCACAGTCGTGCTTTTAGACAGC
GTGGAGAAGCTGCACGTGATTGATCGGCAGACGCAGGAGGAACTGGAGACAATGGAGATCTCGGAAGTCC
AGCTGGTCTACAACAGCAGCCACTTCAAGTCATTGGCCACGGGAGGAAATGTTAGCCAGGCCCTGGCTTT
GGTTGGAGAGAAGGCTTGCTACCAATCCATCAGTAGCTATGGAGGACAGATCTTCTATCTGGGGACCAAG
TCTGTGTACGTGATGATGCTGAGAAGCTGGAGGGAGAGGATGGACCATCTCCTGAAACAGGATTGCCTTA
CGGAAGCCTTGGCCCTCGCGTGGTCTTTTCATGAAGGAAAGGCAAAAGCAGTAGTGGGGCTATCGGGGGA
TGTCAGCAAGAGGAAGGCTGTTGTTGCTGATCGGATGGTAGAGATCCTGTTCCATTATGCAGATCGGGCT
CTGAAAAAGTGCCCGGACCAGGGGAAAATCCAAGTGATGGAGCAACACTTTCAGGATACGGTGCCAGTCA
TAGTGGACTACTGCCTTCTGCTCCAGCGAAAGGATCTTCTATTTGGTCAAATGTACGACAAATTAAGTGA
AAATTCCGTCGCAAAAGGCGTGTTTTTGGAGTGCCTTGAGCCATATATCTTAAGTGATAAACTGGTGGGG
ATTACTCCCCAGGTCATGAAGGACTTAATTGTTCATTTCCAAGATAAAAAACTGCTGGAGAATGTGGAAG
CCCTCATTGTCCACATGGACATCACCAGCCTCGACATTCAGCAGGTGGTCCTCATGTGTTGGGAGAATCG
TCTGTATGACGCCATGGTCTATGTCTACAACCGAGGCATGAATGAGTTTATCAGTCCGATGGAGAAGCTT
TTCAAAGTCATCGCCCCACCTCTGAATGCAGGGAAGACTCTTACAGATGAGCAAGTTGTTATGGGCAACA
AGCTTCTGGTGTACATCAGCTGTTGCCTGGCAGGTCGTGCCTACCCTCTCGGTGACATTCCTGAAGATCT
TGTTCCCTTGGTTAAAAACCAGGTTTTTGAGTTTCTGATTCGCCTGCATTCTGTAGAAGCATCCTCCGAG
GAAGAAGTCTATCCTTATGTTCGGACTTTGCTACATTTTGACACAAGAGAATTTCTGAATGTGCTGGCAC
TGACCTTTGAAGACTTTAAAAATGATAAGCAAGCTGTGGAATACCAGCAGCGCATTGTGGATATTTTATT
GAAGGTTATGGTGGAGAATTCAGATTTTACCCCGTCACAAGTGGGGTGTCTCTTTACGTTCCTCGCTCGT
CAGCTCGCAAAGCCTGACAATACCTTGTTTGTGAACAGGACCCTCTTTGATCAAGTCCTCGAGTTCCTCT
GTAGCCCCGACGATGACTCCCGCCACTCTGAAAGACAGCAGGTCCTTTTAGAATTGCTGCAGGCCGGAGG
CATAGTTCAATTTGAAGAGAGTCGGCTCATCCGCATGGCAGAAAAGGCAGAATTCTATCAAATCTGTGAA
TTTATGTATGAGCGGGAACACCAGTATGACAAGATCATTGACTGCTACCTGCACGACCCATTGAGAGAGG
AAGAAGTCTTCAATTATATCCACAACATCTTATCTATTCCTGGTCACAGTGCTGAGGAGAAGCAGTCTGT
GTGGCAGAAAGCAATGAATCATATGGAGAACCAGCTTTTGCTTTTCAAATTTTTGAGGAGTCTTCTTGAT
CCAAGGGAAGGTGTTCATGTCAATCAGGAGTTGCTGCAGATCCCGCCTCACATTACAGAGCAGTTCATTG
AGCTGCTGTGCCAGTTCAGTCCTGACCAAGTCATACAGACACTGCAGGTCCTTGAGTGCTACCGTCTGGA
GGAAACGATTCAGATTACACAAAAGTATCAACTCCATGAAGTCACTGCGTATCTGCTGGAGAAGAAAGGG
GATGCACACGGCGCCTTCCTGCTGCTGCTGGAGAGACTGCAGAGCAGGCTGCAAGAGATGACACGGCAGG
ACGAAAATACCAAGGAGGACATCCTGCTGAAAGGTGTTGAAGATACCATGGTAGAGACAATTGCTCTTTG
CCAGAGAAATTCACAGAATTTGAATCAGCAGCAACGAGAGGCTCTATGGTTTCCACTGTTGGAGGCAATG
ATGACACCACAGAAGCTGTCCAGCTCGGCTGCTGCTCCTCATCCGCACTGTGAAGCTCTGAAGTCTTTGA
CCATGCAAGTCCTAAACAGCATGGCAGCGTTCATCGCCCTCCCGTCCATCCTACAGAGAATCTTGCAGGA
CCCAATTTATGGAAAAGGAAAGCTTGGAGAAATCCAGGGCCTTATTCTGGGGATGCTGGACACCTTCAAC
TATGAGCAAACCTTGCTAGAAACAACAGCCAGCCTCCTGAACCAAGATCTCCATTGGTCACTGTGTAACC
TGAGAGCATCAGTATCCAGAGGACTCAATCCCAAGCAGGATTACTGTTCTATATGTTTACAGCAGTACAA
AAGACGCCAAGAAATGGCTGATGAAATTATTGTCTTTAGCTGTGGCCATTTGTATCATTCATTCTGTCTC
CAAAGTAAGGAATGCACCCTAGAGGTTGAGGGTCAGACGAGATGGGCGTGTCACAAATGCAGCTCAAGTA
ATAAAGCGGGCAAACTCAGTGAAAATCCTTCTGAAAACAAGAAAGGACGGATAACCTCGTCTCAGGTAAA
AATGTCGCCCTCGTATCATCAGTCCAAAGGGGATCCTCCCGCCAGGAAGGCAAACTCAGAACCTGTTCTG
GACCCACAGCAAATGCAAGCCTTTGATCAGCTCTGCCGTCTCTACAGAGGAAGTTCTAGGTTGGCTCTCC
TTACGGAGCTCTCCCAGAACCGAGGTGGCGACAGCTGCAGGCCGTTTGCTGGCCCCCAGAGTGGGCCTGC
TTTCAACAGCGTCTTCCAGAAGGAGAACTTCCAGCTGCAGCTCGCGCCTCCGCCTGTGGCTGAAGACTGA

Translation (1399 aa):
METEPDQEHLDQNPCARTVEEELSKSFNLEASLSKFSCLDLDKELEFRSDLIDDKEFDIPQVDTPPTLES
ILNETDDEDESFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKKKLPDSFSLHGSVMRHSLLKG
ISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGKDQNQALRLCLGSTSVGGQYGAISALSINND
CSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVR
TCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSS
VPLLAWHFVAVNNSVNPMLAFCRGDMVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
VEKLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTK
SVYVMMLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAVVADRMVEILFHYADRA
LKKCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFGQMYDKLSENSVAKGVFLECLEPYILSDKLVG
ITPQVMKDLIVHFQDKKLLENVEALIVHMDITSLDIQQVVLMCWENRLYDAMVYVYNRGMNEFISPMEKL
FKVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSE
EEVYPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICE
FMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMNHMENQLLLFKFLRSLLD
PREGVHVNQELLQIPPHITEQFIELLCQFSPDQVIQTLQVLECYRLEETIQITQKYQLHEVTAYLLEKKG
DAHGAFLLLLERLQSRLQEMTRQDENTKEDILLKGVEDTMVETIALCQRNSQNLNQQQREALWFPLLEAM
MTPQKLSSSAAAPHPHCEALKSLTMQVLNSMAAFIALPSILQRILQDPIYGKGKLGEIQGLILGMLDTFN
YEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSICLQQYKRRQEMADEIIVFSCGHLYHSFCL
QSKECTLEVEGQTRWACHKCSSSNKAGKLSENPSENKKGRITSSQVKMSPSYHQSKGDPPARKANSEPVL
DPQQMQAFDQLCRLYRGSSRLALLTELSQNRGGDSCRPFAGPQSGPAFNSVFQKENFQLQLAPPPVAED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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