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Report for CCDS70655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70655.1 Public Mus musculus 15 Scube1 23 108 98 CCDS HistoryNCBI Gene:64706Re-query CCDS DB by CCDS ID:70655.1Re-query CCDS DB by GeneID:64706See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 70655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016907.7 ENSMUSP00000016907.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016907.7Link to Ensembl Protein Viewer:ENSMUSP00000016907.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016907Re-query CCDS DB by Protein ID:ENSMUSP00000016907
Original member Current member NCBI NM_001271472.1 NP_001258401.1 Accepted alive Link to Nucleotide Sequence:NM_001271472.1Link to Protein Sequence:NP_001258401.1Re-query CCDS DB by Nucleotide ID:NM_001271472Re-query CCDS DB by Protein ID:NP_001258401Link to BLAST:NP_001258401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258401.1 1018 Q6NZL8-1 1018 100% 0 0

Chromosomal Locations for CCDS 70655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83607325 83607477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83608218 83608297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83608724 83608876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83610154 83610351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83612416 83612577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83613438 83613605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83614870 83615031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83616611 83616814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83618552 83618689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83620056 83620172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83621029 83621133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83621412 83621531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83627952 83628074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83629384 83629500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83634671 83634793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83638704 83638820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83651655 83651744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83654169 83654285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83659026 83659151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83676906 83677040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83703418 83703546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83721850 83721981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83724819 83724906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGGGCGCGGCGGCCGTGCGCTGGCACTTGTACCTACTGCTCGCTCTGGGAGCGCGCGGGCGGCTGGTGG
GGGGCAGCGGGCTGCCAGGAGCCGTGGACGTGGATGAATGCTCAGAGGGCACAGACGACTGCCACATAGA
TGCCATCTGCCAGAACACACCCAAGTCTTACAAATGTCTCTGCAAGCCCGGCTATAAGGGGGAAGGAAGG
CAGTGTGAAGACATTGACGAGTGTGAGAATGACTACTACAACGGGGGCTGTGTCCATGACTGCATCAACA
TCCCTGGGAACTACAGGTGCACCTGCTTTGATGGCTTCATGCTGGCCCATGATGGACACAACTGCCTGGA
TGTAGATGAGTGTCAAGACAACAACGGCGGCTGCCAGCAGATCTGCGTCAATGCCATGGGCAGCTATGAA
TGCCAGTGCCACAGCGGCTTTTTTCTCAGTGACAACCAACACACCTGCATACACCGCTCCAATGAGGGTA
TGAACTGCATGAACAAAGACCATGGCTGTGCCCACATCTGCCGGGAGACGCCCAAAGGTGGGGTAGCCTG
TGACTGCAGGCCCGGCTTTGACCTTGCCCAAAACCAGAAGGACTGCACACTAACCTGTAACTATGGAAAC
GGAGGCTGTCAGCACAGCTGCGAGGACACGGACACGGGCCCCATGTGTGGCTGCCACCAGAAGTACGCCT
TACATGCAGATGGTCGGACGTGCATCGAGAAGGATGAGGCTGCAATTGAGCGCTCTCAGTTCAATGCCAC
GTCAGTAGCTGATGTGGACAAGCGGGTGAAACGGCGGCTCCTCATGGAGACATGTGCAGTGAACAACGGA
GGCTGTGACCGGACGTGTAAGGACACTGCCACTGGCGTGCGGTGCAGCTGCCCGGTTGGATTCACGCTGC
AGCCAGATGGAAAGACATGCAAAGACATCAACGAGTGCTTGATGAATAACGGAGGCTGCGACCACTTCTG
CCGAAACACCGTGGGCAGCTTTGAATGCGGCTGCCAAAAGGGCCACAAGCTACTGACGGACGAGCGGACA
TGCCAAGACATTGACGAGTGTTCCTTTGAGCGGACCTGTGACCACATCTGCATCAACTCCCCCGGCAGTT
TCCAGTGCCTGTGCCGCCGAGGCTACACACTCTACGGGACAACCCACTGCGGAGACGTGGATGAATGTAG
CATGAACAACGGCAGCTGTGAGCAGGGCTGTGTCAACACCAAGGGCAGCTACGAGTGTGTGTGCCCACCA
GGGAGGAGGCTGCACTGGAATCAGAAGGACTGTGTGGAGATGAACGGGTGCCTGTCTCGGTCCAAGGCCT
CTGCCCAGGCCCAGCTGTCCTGTGGCAAGGTGGGTGGAGTGGAAAACTGCTTCCTGTCCTGCCTGGGCCA
CAGTCTCTTCATGCCAGATTCAGAAAGCAGCTACATCCTGAGCTGTGGTGTTCCAGGTCTCCAGGGCAAG
ACACTGCCAAAACGCAATGGCACTAGCTCCAGTACAGGGCCCGGCTGCTCAGATGCCCCCACCACCCCTA
TCAGACAGAAGGCCCGCTTCAAGATCAGAGATGCCAAGTGCCATCTCCAGCCCCGCAGCCAGGAGCGAGC
CAAGGATACCCTGAGGCATCCCCTTTTAGACAACTGCCACGTGACTTTTGTGACCCTCAAGTGTGACTCC
TCCAAGAAGAGGCGCCGAGGCCGCAAGTCCCCATCCAAGGAGGTGTCCCACATCACAGCAGAGTTTGAGG
TGGAGATGAAGGTGGATGAGGCCTCAGGCACCTGCGAAGCAGACTGCATGCGGAAGCGTGCCGAGCAGAG
CCTGCAAGCCGCCATCAAGATTCTGCGCAAGTCCATTGGTCGGAACCAGTTCTATGTCCAGGTCTTGGGC
ACTGAGTACGAGGTGGCCCAGCGGCCAGCCAAAGCACTGGAGGGAACCGGGACTTGCGGCATAGGCCAAA
TACTACAGGACGGCAAGTGTGTACCGTGTGCTCCTGGCACCTACTTCAGTGGTGACCCAGGCCAGTGTAT
GCCATGCGTGTCGGGAACCTACCAGGACATGGAAGGCCAGCTCAGCTGCACGCCATGCCCCAGCAGCGAA
GGACTGGGTCTGGCTGGTGCCCGAAACGTATCCGAATGTGGAGGCCAGTGCTCTCCAGGCTACTTCTCAG
CGGATGGGTTCAAGCCTTGCCAGGCCTGCCCTGTGGGCACATACCAGCCCGAGCCTGGGCGAACCGGCTG
CTTCCCCTGTGGAGGCGGGCTGCTCACCAAACACACGGGTACCGCCTCTTTCCAGGACTGCGAGGCCAAA
GTGCATTGCTCTCCCGGACACCACTACAATACCACCACCCACCGGTGTATCCGCTGTCCCGTGGGCACCT
ATCAGCCCGAGTTTGGCCAGAACCATTGCATCTCCTGTCCGGGCAACACCAGCACCGATTTTGATGGTTC
CACCAACGTCACACACTGCAAGAACCAGCACTGCGGCGGCGAACTTGGTGACTACACAGGCTACATCGAG
TCCCCCAACTACCCTGGCGACTACCCAGCCAATGCAGAGTGTGTGTGGCACATCGCACCTCCCCCAAAGC
GCAGGATCCTAATCGTAGTCCCGGAGATCTTCCTACCCATCGAGGACGAGTGTGGTGATGTCCTGGTCAT
GAGAAAGAGTGCCTCGCCCACGTCAGTCACCACCTATGAGACGTGCCAGACCTATGAGCGGCCCATCGCC
TTTACCTCCCGTTCCCGCAAACTCTGGATCCAGTTCAAATCCAACGAAGCCAACAGTGGCAAAGGGTTTC
AAGTGCCCTATGTCACCTATGATGAGGACTACCAGCAGCTAATAGAAGACATCGTGCGTGATGGGCGCTT
ATATGCCTCGGAGAACCATCAGGAGATTTTGAAAGACAAGAAGCTGATCAAGGCCCTCTTTGACGTGCTG
GCACACCCACAAAACTACTTCAAATACACAGCCCAGGAGTCCAAGGAGATGTTCCCCCGGTCCTTTATCA
AACTTCTGCGTTCCAAAGTGTCTCGGTTCCTGCGGCCCTACAAATAA

Translation (1018 aa):
MGAAAVRWHLYLLLALGARGRLVGGSGLPGAVDVDECSEGTDDCHIDAICQNTPKSYKCLCKPGYKGEGR
QCEDIDECENDYYNGGCVHDCINIPGNYRCTCFDGFMLAHDGHNCLDVDECQDNNGGCQQICVNAMGSYE
CQCHSGFFLSDNQHTCIHRSNEGMNCMNKDHGCAHICRETPKGGVACDCRPGFDLAQNQKDCTLTCNYGN
GGCQHSCEDTDTGPMCGCHQKYALHADGRTCIEKDEAAIERSQFNATSVADVDKRVKRRLLMETCAVNNG
GCDRTCKDTATGVRCSCPVGFTLQPDGKTCKDINECLMNNGGCDHFCRNTVGSFECGCQKGHKLLTDERT
CQDIDECSFERTCDHICINSPGSFQCLCRRGYTLYGTTHCGDVDECSMNNGSCEQGCVNTKGSYECVCPP
GRRLHWNQKDCVEMNGCLSRSKASAQAQLSCGKVGGVENCFLSCLGHSLFMPDSESSYILSCGVPGLQGK
TLPKRNGTSSSTGPGCSDAPTTPIRQKARFKIRDAKCHLQPRSQERAKDTLRHPLLDNCHVTFVTLKCDS
SKKRRRGRKSPSKEVSHITAEFEVEMKVDEASGTCEADCMRKRAEQSLQAAIKILRKSIGRNQFYVQVLG
TEYEVAQRPAKALEGTGTCGIGQILQDGKCVPCAPGTYFSGDPGQCMPCVSGTYQDMEGQLSCTPCPSSE
GLGLAGARNVSECGGQCSPGYFSADGFKPCQACPVGTYQPEPGRTGCFPCGGGLLTKHTGTASFQDCEAK
VHCSPGHHYNTTTHRCIRCPVGTYQPEFGQNHCISCPGNTSTDFDGSTNVTHCKNQHCGGELGDYTGYIE
SPNYPGDYPANAECVWHIAPPPKRRILIVVPEIFLPIEDECGDVLVMRKSASPTSVTTYETCQTYERPIA
FTSRSRKLWIQFKSNEANSGKGFQVPYVTYDEDYQQLIEDIVRDGRLYASENHQEILKDKKLIKALFDVL
AHPQNYFKYTAQESKEMFPRSFIKLLRSKVSRFLRPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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