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Report for CCDS70472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70472.1 Public Mus musculus 13 Fancc 23 108 98 CCDS HistoryNCBI Gene:14088Re-query CCDS DB by CCDS ID:70472.1Re-query CCDS DB by GeneID:14088See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099444.9 ENSMUSP00000097043.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099444.9Link to Ensembl Protein Viewer:ENSMUSP00000097043.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099444Re-query CCDS DB by Protein ID:ENSMUSP00000097043
Original member Current member NCBI NM_001282942.1 NP_001269871.1 Accepted alive Link to Nucleotide Sequence:NM_001282942.1Link to Protein Sequence:NP_001269871.1Re-query CCDS DB by Nucleotide ID:NM_001282942Re-query CCDS DB by Protein ID:NP_001269871Link to BLAST:NP_001269871.1

Chromosomal Locations for CCDS 70472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 63312666 63312803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63317353 63317556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63321867 63322044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63323408 63323489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63325551 63325626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63330521 63330620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63331841 63331893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63340319 63340475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63347420 63347584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63360196 63360260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63361579 63361692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63398083 63398136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAACAAAGAACCTCGGACTTCTGCAGAGTCAGGACTTAACTCGTGGATCCGGGGTTTGTTATCTCATG
TACTTTCTGCATTCAGATTCGACATGAAAGAAGTTTGTCTTTTTACCAAAAGTCTTGGATATGAGTCTAT
TGATTACTATCCTAGTTTGCTTAAAAATATGGTTTTGTCATTAGTGTCTGAGCTCAGAGAGAGTCATCTT
AATGGACTGAGCACTCAAAGTCGGATGGCTCCTGAGCGCATGATGTCCCTGTCAGAAGTTTGTGTCCCTC
TTGTCACTCTGCCTGATATGGAACCCCTGGTAGAGGCTCTACTCACCTACCATGGACATGAGCCCCAGGA
AGTCCTGGCTCCTGAGTTCTTCGAAGCTGTAAATGAGGCCTTCTTGTCGGAAAAAATTGTTCTACCCACG
TCCTCTGTGGTCAGCCTCTGGTTTCGGCATCTCCCCAGTCTTGAAAAAGCAACGCTGCATCTTTTTGAAA
AGCTTTTCTCCAGCAAGATAATTTGCCTGAGAAGGATGGAGTGCTGTATAAGAGAGTCATTCCTGCCTCA
AGCAGCCTGCCAACCTGCCATCTTCAGAATTGTTGATGAAATGTTCAGGTTTGTGCTGCTGGAAACTGAC
GGAGCCCCAGAAGTACTAGCTGCTCTTCAGGTTTTCACATCGTGCTTGGTAGAAGCTCTGAAAAAAGAAA
ACAAGCAGCTGACGTTTGCCCTCAGGACCTACTTTCCTTACGGTGCTCCATGTCTTGCTGCAGCGCTGTC
CCAGCACCCTGAAGCAATCCCACAGGGACACCGGCTCCAGCCTCTGCTGCACATTTCCCAACTCCTCAGA
GAAGCAGTTGAAGACTGTACTCGTGGGTCTCCGCGAAATCCCTTTGAGAGCTGGTTTTTGTTTGTTCACT
TTGGAGGATGGGTTGACCTGGCTGTGGCAGAGTTACTGCTGAGGGAGGAAGCTGAGCCTCCTGCTGGCCT
GCTGTGGCTCTTGGTGTTCTATTACAGCCCACAGGATGGGAGTCAGCAGAGAGAGCAGAGCATGGTGGAG
CTGAAGGTATTAATCAACCGTCTCCTGATGCTGCTCAGAAGCGGCCCCCTCTCAGCTACTGATCTGCAGG
AAGCAGCTGAGAGTCCCAGTGGAGACCCCAGACCACCTGTATGTGGACAGCTGGTCAGACGCCTTCTTCT
TAGTCTCTTGCTCTGGACCCCAGAAGGCCATGCAATTGTCTGGGAAGCTGTCACCCATATGGCCCACACG
GATGCTGTAATCCATGAGATTATTGGTTTTCTTGACCAGACCTTGTACAGATCACAACATCTTTGTGTTG
AAGCCTCGAGAAAACTGGCCAGAGACCTCCTAAAGGAGCTGCAAGCCCAGGTCTAG

Translation (461 aa):
MNKEPRTSAESGLNSWIRGLLSHVLSAFRFDMKEVCLFTKSLGYESIDYYPSLLKNMVLSLVSELRESHL
NGLSTQSRMAPERMMSLSEVCVPLVTLPDMEPLVEALLTYHGHEPQEVLAPEFFEAVNEAFLSEKIVLPT
SSVVSLWFRHLPSLEKATLHLFEKLFSSKIICLRRMECCIRESFLPQAACQPAIFRIVDEMFRFVLLETD
GAPEVLAALQVFTSCLVEALKKENKQLTFALRTYFPYGAPCLAAALSQHPEAIPQGHRLQPLLHISQLLR
EAVEDCTRGSPRNPFESWFLFVHFGGWVDLAVAELLLREEAEPPAGLLWLLVFYYSPQDGSQQREQSMVE
LKVLINRLLMLLRSGPLSATDLQEAAESPSGDPRPPVCGQLVRRLLLSLLLWTPEGHAIVWEAVTHMAHT
DAVIHEIIGFLDQTLYRSQHLCVEASRKLARDLLKELQAQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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