NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS70430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70430.1 Public Mus musculus 13 Lgals8 23 108 98 CCDS HistoryNCBI Gene:56048Re-query CCDS DB by CCDS ID:70430.1Re-query CCDS DB by GeneID:56048See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143693.7 ENSMUSP00000118925.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143693.7Link to Ensembl Protein Viewer:ENSMUSP00000118925.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143693Re-query CCDS DB by Protein ID:ENSMUSP00000118925
Original member Current member EBI ENSMUST00000135166.7 ENSMUSP00000120210.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135166.7Link to Ensembl Protein Viewer:ENSMUSP00000120210.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135166Re-query CCDS DB by Protein ID:ENSMUSP00000120210
Original member Current member NCBI NM_001291057.1 NP_001277986.1 Accepted alive Link to Nucleotide Sequence:NM_001291057.1Link to Protein Sequence:NP_001277986.1Re-query CCDS DB by Nucleotide ID:NM_001291057Re-query CCDS DB by Protein ID:NP_001277986Link to BLAST:NP_001277986.1
Original member Current member NCBI NM_001291060.1 NP_001277989.1 Accepted alive Link to Nucleotide Sequence:NM_001291060.1Link to Protein Sequence:NP_001277989.1Re-query CCDS DB by Nucleotide ID:NM_001291060Re-query CCDS DB by Protein ID:NP_001277989Link to BLAST:NP_001277989.1

Chromosomal Locations for CCDS 70430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 12440845 12440994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12447147 12447312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12448419 12448507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12451401 12451427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12452722 12452778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12453285 12453404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12454735 12454797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGCCCTTCAGAAAAGAAAAGTCCTTTGAGATCGTGTTCATGGTGCTCAAGAACAAATTCCAGGTGGCTG
TGAACGGAAGGCATGTTCTGCTGTACGCCCACAGGATCAGCCCGGAGCAGATCGACACAGTGGGCATCTA
CGGCAAAGTGAACATCCACTCCATCGGGTTCAGATTCAGCTCGGATTTACAGAGTATGGAAACATCTGCT
CTGGGACTGACACAGATAAACAGAGAGAATATACAAAAGCCAGGCAAGCTCCAGCTGAGCCTGCCATTTG
AAGCAAGGTTGAATGCCTCCATGGGTCCTGGACGAACCGTTGTCATTAAAGGGGAAGTGAACACCAATGC
CCGAAGCTTTAATGTTGACCTAGTGGCAGGAAAAACAAGGGATATCGCTCTGCACTTGAACCCACGCCTC
AATGTGAAAGCATTTGTAAGAAATTCCTTTCTTCAGGATGCCTGGGGAGAAGAGGAGAGAAATATTACCT
GCTTCCCATTTAGTTCTGGGATGTACTTTGAGATGATAATCTACTGTGATGTCCGGGAATTCAAGGTTGC
TATAAATGGTGTGCACAGCCTGGAGTACAAACACAGATTTAAAGACCTAAGCAGTATTGATACACTATCA
GTCGATGGTGATATCCGTTTGCTGGATGTAAGGAGCTGGTAG

Translation (223 aa):
MPFRKEKSFEIVFMVLKNKFQVAVNGRHVLLYAHRISPEQIDTVGIYGKVNIHSIGFRFSSDLQSMETSA
LGLTQINRENIQKPGKLQLSLPFEARLNASMGPGRTVVIKGEVNTNARSFNVDLVAGKTRDIALHLNPRL
NVKAFVRNSFLQDAWGEEERNITCFPFSSGMYFEMIIYCDVREFKVAINGVHSLEYKHRFKDLSSIDTLS
VDGDIRLLDVRSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH