NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6939.1 Public Homo sapiens 9 AIF1L 24 110 108 CCDS HistoryNCBI Gene:83543Re-query CCDS DB by CCDS ID:6939.1Re-query CCDS DB by GeneID:83543See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000247291.8 ENSP00000247291.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000247291.8Link to Ensembl Protein Viewer:ENSP00000247291.3Re-query CCDS DB by Nucleotide ID:ENST00000247291Re-query CCDS DB by Protein ID:ENSP00000247291
Original member Current member NCBI NM_031426.4 NP_113614.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031426.4Link to Protein Sequence:NP_113614.1Re-query CCDS DB by Nucleotide ID:NM_031426Re-query CCDS DB by Protein ID:NP_113614Link to BLAST:NP_113614.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113614.1 150 Q9BQI0-1 150 100% 0 0

Chromosomal Locations for CCDS 6939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 131096630 131096660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131096802 131096863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131111597 131111663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131114577 131114618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131117756 131117918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131120235 131120322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTCGGGCGAGCTCAGCAACAGGTTCCAAGGAGGGAAGGCGTTCGGCTTGCTCAAAGCCCGGCAGGAGA
GGAGGCTGGCCGAGATCAACCGGGAGTTTCTGTGTGACCAGAAGTACAGTGATGAAGAGAACCTTCCAGA
AAAGCTCACAGCCTTCAAAGAGAAGTACATGGAGTTTGACCTGAACAATGAAGGCGAGATTGACCTGATG
TCTTTAAAGAGGATGATGGAGAAGCTTGGTGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCAG
AGGTGACAGGAGGGGTCAGTGACACTATATCCTACCGAGACTTTGTGAACATGATGCTGGGGAAACGGTC
GGCTGTCCTCAAGTTAGTCATGATGTTTGAAGGAAAAGCCAACGAGAGCAGCCCCAAGCCAGTTGGCCCC
CCTCCAGAGAGAGACATTGCTAGCCTGCCCTGA

Translation (150 aa):
MSGELSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLM
SLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGP
PPERDIASLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH