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Report for CCDS68342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68342.1 Public Homo sapiens 3 VGLL4 24 110 108 CCDS HistoryNCBI Gene:9686Re-query CCDS DB by CCDS ID:68342.1Re-query CCDS DB by GeneID:9686See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68342.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413604.5 ENSP00000404624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413604.5Link to Ensembl Protein Viewer:ENSP00000404624.1Re-query CCDS DB by Nucleotide ID:ENST00000413604Re-query CCDS DB by Protein ID:ENSP00000404624
Original member Current member NCBI NM_001284391.1 NP_001271320.1 Accepted alive Link to Nucleotide Sequence:NM_001284391.1Link to Protein Sequence:NP_001271320.1Re-query CCDS DB by Nucleotide ID:NM_001284391Re-query CCDS DB by Protein ID:NP_001271320Link to BLAST:NP_001271320.1

Chromosomal Locations for CCDS 68342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 11558556 11558827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11559332 11559455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11564797 11565019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11601833 11601909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGAGCCAGGTGACGAGGACCTAGACTGTGACAACGACCACGTCTCCAAAATGAGTCGCATCTTCAACC
CCCATCTGAACAAGACTGCCAATGGAGACTGCCGCAGAGACCCCCGGGAGCGGAGCCGCAGCCCCATCGA
GCGCGCTGTGGCCCCCACCATGAGCCTGCACGGCAGCCACCTGTACACCTCCCTCCCCAGCCTTGGCCTG
GAGCAGCCCCTCGCACTGACCAAGAACAGCCTGGACGCCAGCAGGCCAGCCGGCCTCTCGCCCACACTGA
CCCCGGGGGAGCGGCAGCAGAACCGGCCCTCCGTGATCACCTGTGCCTCGGCTGGCGCCCGCAACTGCAA
CCTCTCGCACTGCCCCATCGCGCACAGCGGCTGTGCCGCGCCCGGGCCTGCCAGCTACCGGAGGCCACCG
AGCGCTGCCACCACCTGTGACCCCGTGGTGGAGGAGCATTTCCGCAGGAGCCTGGGCAAGAATTACAAGG
AGCCCGAGCCGGCACCCAACTCCGTGTCCATCACGGGCTCCGTGGACGACCACTTTGCCAAAGCTCTGGG
TGACACGTGGCTCCAGATCAAAGCGGCCAAGGACGGAGCATCCAGCAGCCCTGAGTCCGCCTCTCGCAGG
GGCCAGCCCGCCAGCCCCTCTGCCCACATGGTCAGCCACAGTCACTCCCCCTCTGTGGTCTCCTGA

Translation (231 aa):
MEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGL
EQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPP
SAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRR
GQPASPSAHMVSHSHSPSVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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