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Report for CCDS6827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6827.1 Public Homo sapiens 9 RAB14 24 110 108 CCDS HistoryNCBI Gene:51552Re-query CCDS DB by CCDS ID:6827.1Re-query CCDS DB by GeneID:51552See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373840.9 ENSP00000362946.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373840.9Link to Ensembl Protein Viewer:ENSP00000362946.4Re-query CCDS DB by Nucleotide ID:ENST00000373840Re-query CCDS DB by Protein ID:ENSP00000362946
Original member Current member EBI ENST00000703999.1 ENSP00000515613.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703999.1Link to Ensembl Protein Viewer:ENSP00000515613.1Re-query CCDS DB by Nucleotide ID:ENST00000703999Re-query CCDS DB by Protein ID:ENSP00000515613
Original member Current member EBI ENST00000704000.1 ENSP00000515614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704000.1Link to Ensembl Protein Viewer:ENSP00000515614.1Re-query CCDS DB by Nucleotide ID:ENST00000704000Re-query CCDS DB by Protein ID:ENSP00000515614
Original member Current member NCBI NM_016322.4 NP_057406.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016322.4Link to Protein Sequence:NP_057406.2Re-query CCDS DB by Nucleotide ID:NM_016322Re-query CCDS DB by Protein ID:NP_057406Link to BLAST:NP_057406.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057406.2 215 P61106 215 100% 0 0

Chromosomal Locations for CCDS 6827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121181396 121181573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121182930 121182960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121183311 121183398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121186953 121187019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121190554 121190731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121192171 121192224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121193361 121193412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCAACTGCACCATACAACTACTCTTACATCTTTAAATATATTATTATTGGGGACATGGGAGTAGGAA
AATCTTGCTTGCTTCATCAATTTACAGAAAAAAAATTTATGGCTGATTGTCCTCACACAATTGGTGTTGA
ATTTGGTACAAGAATAATCGAAGTTAGTGGCCAAAAAATAAAACTGCAGATTTGGGATACGGCAGGACAG
GAGCGATTTAGGGCTGTTACACGGAGCTACTACAGAGGAGCTGCGGGAGCTCTTATGGTCTATGATATCA
CTAGAAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAATCTCACCAATCCAAATAC
TGTAATAATTCTCATAGGAAATAAAGCAGATTTGGAGGCACAGAGAGATGTTACATATGAAGAAGCCAAA
CAGTTTGCTGAAGAAAATGGCTTATTGTTCCTCGAAGCGAGTGCAAAAACGGGAGAGAATGTAGAAGATG
CCTTCCTTGAGGCTGCCAAGAAAATCTATCAGAACATTCAGGATGGAAGCTTGGATCTGAATGCTGCTGA
GTCTGGTGTACAACACAAACCTTCAGCCCCGCAGGGAGGCCGGCTAACCAGTGAACCCCAACCCCAGAGA
GAAGGCTGTGGCTGCTAG

Translation (215 aa):
MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ
ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAK
QFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQR
EGCGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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